SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34730 | AT | Annotation by Michelle Graham. TAIR10: ribosome-binding factor A family protein | chr4:16570019-16571274 REVERSE LENGTH=215 | SoyBase | E_val: 2.00E-84 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PF02033 | PFAM | Ribosome-binding factor A | JGI | ISS | |
| UniRef100_B9RG62 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosome-binding factor A, putative n=1 Tax=Ricinus communis RepID=B9RG62_RICCO | SoyBase | E_val: 3.00E-85 | ISS |
| UniRef100_I1K721 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K721_SOYBN | SoyBase | E_val: 4.00E-157 | ISS |
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Glyma06g00960 not represented in the dataset |
Glyma06g00960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g007300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g00960.2 sequence type=CDS gene model=Glyma06g00960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCAACGTTGAGAGCGATAGTGCGGTGCGGCGGCACAAAGGTGAAAGCACGAGAGTGGGCGGTTTCAAGGCAACAAGCTAGGTTTGGGCGCGAGAAACAAAAGAAAATATCTGGTGTTACGTACTTGGTAGTCTCTGAATCTGAAATTGCAATGCTTCACCCGGCGGCACTGATAGCATCGTGTCCTTATCCTTATCCTTATCCTGGGCGGCATGAGTTACCCTCAGCCTCAGCGTCAGCGACAGCCAGAGTCGCTGTTCCAATGCCAAATCTGAGAGGCAAAGCGGTTGTTGGTGTTGGTTCCAGAATGATAAGGTGCATGGCTAACCCCAGAAGAGTTCAAATGGTGGCCAAGCAAATTAGGAGAGAGCTTTCTCATATGCTTCTCACCGATAAAGTCTTGCAGTATGCTGTTCTTCCCGAAGCCTCCTTAGGAGCCGACCGTTACCTCTCTTCTCTCACCACCATCACCGACGTCCAAGTCTCCGCCGACTTGCAGGTTGTTAAGGTGTATGTTTCTGTTTTTGGAGATGAAAGAGGTAAAGAAGTCGCCATTGCCGGCTTGAAATCTAAGGCTAAATATGTTCGCAGCGAGTTGGGCAAGCGTATCAAGTTGCGCTTAACTCCTGAGATACGCTTTCTTGAGGATGATTCTTTTGAGAGAGGAAGCAGGGTCATTGCAATACTAGATAAAATAAAGAATGACAAAAGCCAATACAAGGCGGAGTTGGATTCGTCACCAAATGAGGATCACGACGATGATTGGGATGGTGAAGATCCTGAAGAAGGCATCATTTATGTGGAATAG
>Glyma06g00960.2 sequence type=predicted peptide gene model=Glyma06g00960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASTLRAIVRCGGTKVKAREWAVSRQQARFGREKQKKISGVTYLVVSESEIAMLHPAALIASCPYPYPYPGRHELPSASASATARVAVPMPNLRGKAVVGVGSRMIRCMANPRRVQMVAKQIRRELSHMLLTDKVLQYAVLPEASLGADRYLSSLTTITDVQVSADLQVVKVYVSVFGDERGKEVAIAGLKSKAKYVRSELGKRIKLRLTPEIRFLEDDSFERGSRVIAILDKIKNDKSQYKAELDSSPNEDHDDDWDGEDPEEGIIYVE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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