Glyma06g00940 - SoyBase

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Report for Sequence Feature Glyma06g00940

Feature Type:	gene_model
Chromosome:	Gm06
Start:	521886
stop:	523298
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68930	AT	Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) repeat-containing protein \| chr1:25918314-25920545 FORWARD LENGTH=743	SoyBase	E_val: 8.00E-62	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7J7U2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J7U2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A693	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A693 related cluster n=1 Tax=unknown RepID=UPI000233A693	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00940

Paralog	Evidence	Comments
Glyma04g00910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g006900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g00940

Limit To All Plant Sequences

>Glyma06g00940.2   sequence type=CDS   gene model=Glyma06g00940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAAGTCCAACGTTTTTGAGTTTTTGCACCAATTCCGTGTAAGTGGCAATGTCTCAGCCATTAAGAAACTCCATGCTCAGCTACTCAGAAGAGGCATGCTCTTCCTCTCCCATCATCTCCACACCCAACTCATTGCCACATATGCCGCATGCCTCCCTAACAACACCCGTCAATCCCTCAACAACTTCTTCAAATGCATGAATTCCACCAACCCATTACACTTCAACGCCACAATATCCGATTTCTGTCGCAAAGGTTTCCCCTTTCTCGCTCTCTCCTCCTTCTCCTTCATGCACACCAATGGTGTTCCCTTGGATACATACGCTTTGTGTAGCACGTTGACCGCTTCCTCCAAAGTCAAAGATCTTAATTTGGGGAAGCAGATACACGCCCAAGTGGAAAAATCAGGTTGGTCTTCTAGCGTGTTTGTGGGTAGTGCTCTCATTGATCTGTACTCCAAATTGTCGAATGTAAAAGATGCAGCCCATGTGTTCGATGAAATTTCTGACAAGAACACTGTGTGTGCCAATGCACTTCTGTCGGGTTATGGCGAGGCCGGCCTGTGGGTTCAGGAACTTGAACTAGTTAGGAAGATGCCCGTGTTGAAATTGAAGCATGATCACTTTACTCTATCAGCAGCTTTGCGTGCATGCACTGGATTATCTGCTGTTGAAATGGGTAGGCCAAATGTGGATTACGTAACGAAGGCTTGGCAAGTGTTCAAGTTGGATGGGATGGAGATTCGAAAAGAAGTAAGAAGCAGGGACGTTGTGTTATGGACTCAATTGCTTGACTTGTATGATGAGATGTTGGTGGAAGGAATCAGACCGGATGGAATAGCATTCTTGACAGTGATCTCAGCTTGTGGTCACACTGGCCAAGTTCATGCTGGTATCAAGTACTTTGAGTGTATGGCTAATGATTTCATGTTAGATCCTGGTCCAGAACATTACAGCTGCCTGGTTGATTTGCTTTGTAGGGCTGGTGAATTGCAGAAGGCGTGGGAATTGCTGAATGAGACACTCTATAAGGGAATGGGAAATTGTACTGTGTCCATGTGGGGAGCACTACTCAGTGCTTGTGTGGATCGTGGGGATTTAGACCTTGGCAAATTGGCAGCTGAGAGGGCCCTTGAGTTAGATCCCCAAAATGTTGGGATATTAATTATGCTATCAAATCTGTATGCCCGGTTTGGTATGTGGGAGGAGATCGGTCACTTGAGGGTATTGATCAAAGCAAGAGGGCTAAGAAAAGATGTTGGATGCAGTTGGGTTCAGGTGAGTGAGTAG

Predicted protein sequences of Glyma06g00940

Limit To All Plant Sequences

>Glyma06g00940.2   sequence type=predicted peptide   gene model=Glyma06g00940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKSNVFEFLHQFRVSGNVSAIKKLHAQLLRRGMLFLSHHLHTQLIATYAACLPNNTRQSLNNFFKCMNSTNPLHFNATISDFCRKGFPFLALSSFSFMHTNGVPLDTYALCSTLTASSKVKDLNLGKQIHAQVEKSGWSSSVFVGSALIDLYSKLSNVKDAAHVFDEISDKNTVCANALLSGYGEAGLWVQELELVRKMPVLKLKHDHFTLSAALRACTGLSAVEMGRPNVDYVTKAWQVFKLDGMEIRKEVRSRDVVLWTQLLDLYDEMLVEGIRPDGIAFLTVISACGHTGQVHAGIKYFECMANDFMLDPGPEHYSCLVDLLCRAGELQKAWELLNETLYKGMGNCTVSMWGALLSACVDRGDLDLGKLAAERALELDPQNVGILIMLSNLYARFGMWEEIGHLRVLIKARGLRKDVGCSWVQVSE*

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