Glyma06g00880 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g00880

Feature Type:	gene_model
Chromosome:	Gm06
Start:	501580
stop:	502184
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38840	AT	Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family \| chr4:18125174-18125473 REVERSE LENGTH=99	SoyBase	E_val: 2.00E-31	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02519	PFAM	Auxin responsive protein	JGI		ISS
UniRef100_G7JAR1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 6B n=1 Tax=Medicago truncatula RepID=G7JAR1_MEDTR	SoyBase	E_val: 1.00E-48	ISS
UniRef100_I1K715	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K715_SOYBN	SoyBase	E_val: 6.00E-61	ISS

Expression Patterns of Glyma06g00880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00880

Paralog	Evidence	Comments
Glyma04g00870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g006500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g00880

Limit To All Plant Sequences

>Glyma06g00880.1   sequence type=CDS   gene model=Glyma06g00880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTTCGCTTACCTAGTATTAGACGTTCATCATTCAGTGCAAGCCAAGCATCCTCTTGCAAGGTTGCAGAAGTCCCAAAAGGGTATCTTGCAGTGTATGTTGGAGAGAAAATGAAGAGGTTCTTGATTCCAGTATCATTCTTGAACGAGCCTTTATTTCAAGAATTGCTTAGCCAAGCTGAAGAGGAGTTTGGTTACTGCCATCCCATGGGTGGTCTCACAATTCCCTGCAAGGAGGATGTGTTCTTAAATATAGCTTCTCGCTTGAACCGGCTATAA

Predicted protein sequences of Glyma06g00880

Limit To All Plant Sequences

>Glyma06g00880.1   sequence type=predicted peptide   gene model=Glyma06g00880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFRLPSIRRSSFSASQASSCKVAEVPKGYLAVYVGEKMKRFLIPVSFLNEPLFQELLSQAEEEFGYCHPMGGLTIPCKEDVFLNIASRLNRL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain