Glyma06g00800 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma06g00800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma06g00800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma06g00800

Feature Type:	gene_model
Chromosome:	Gm06
Start:	456502
stop:	460957
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38800	AT	Annotation by Michelle Graham. TAIR10: methylthioadenosine nucleosidase 1 \| chr4:18113355-18114996 REVERSE LENGTH=267	SoyBase	E_val: 3.00E-116	ISS
GO:0000003	GO-bp	Annotation by Michelle Graham. GO Biological Process: reproduction	SoyBase	N/A	ISS
GO:0001944	GO-bp	Annotation by Michelle Graham. GO Biological Process: vasculature development	SoyBase	N/A	ISS
GO:0009116	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process	SoyBase	N/A	ISS
GO:0019509	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-methionine salvage from methylthioadenosine	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008930	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methylthioadenosine nucleosidase activity	SoyBase	N/A	ISS
PTHR21234	Panther	PURINE NUCLEOSIDE PHOSPHORYLASE	JGI		ISS
PTHR21234:SF5	Panther	MTA/SAH NUCLEOSIDASE	JGI		ISS
PF01048	PFAM	Phosphorylase superfamily	JGI		ISS
UniRef100_B6DX57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 5'-methylthioadenosine nucleosidase n=1 Tax=Lupinus luteus RepID=B6DX57_LUPLU	SoyBase	E_val: 2.00E-143	ISS
UniRef100_I1K709	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K709_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g00800 not represented in the dataset	Glyma06g00800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g00800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g005700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g00800

Limit To All Plant Sequences

>Glyma06g00800.2   sequence type=transcript   gene model=Glyma06g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAATTAAGTTACTTGTTCTTAATTTCTGCTAATATATTGTATCGTCTGCGCTTGAGGACCAATCAGTGGAAGAAACCATGGCTGCCCAACCCAAACCTCAGAACCGACCCATTTCTAATATCGTCTTCGTCGTTGCTATGCAGACGGAGGCACTTCCCATCGTCAACAGATTCCAGCTCACTGAGGACCCTCACTCCCCATTTCCGCAAGGGGCTCCTTGGGTCCATTATCATGGGACATTCAAAGATCTCAATATAAACTTGATTTGGACTGGGAATGATCCAACTTTGGGGGTTGATAGTATAGGCACGATACCATCTGCTCTTGCAACATATGCTGCTATTCTAGCATTACAACCAGACTTGATCATCAATGCAGGCACCGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATATTTTTGTTGTATCGGAATGTGCTTTTCATGACAGAAGAATACCTATACCTATTTTTGATCTGTATGGAGTGGGTCTTCGTAAAGCCTTTGAAACACCCAAACTTGTAAAGGAGCTTAATCTAAAGGGAGCTGCTATTGCTTATGTTGCCGACCTACTGAAAGTTCCTGCAATTTTTATAAAAGCCGTGACTAATAACGTTGATGATGACAAAGCAATTGTAGAAGAATTCCTGCAGAATTTGGCAGCTCTAACTGTTGAACTTGGTCTGGCGGTCGAACAAGTTATTAATTTTATTAATGGAAAGTGCATATCTGAACTTTGACAACCCAATTTCACCTTATCCTAGAAGAATATATTTCAACGGGGAGAGCTGCGAAATGCCTTAACCTGACAAGTTTCCTATGTTACCAGATGGTAGCTCTAGTTTAAGATCCACTTATTGTGGTTACAGTATATACAGAATTTTTGTTTCACGACATACTTTATGGATCTTTAATCTTACCCTCCCCAAAAAAATATATTTCCAATCATTGGTTTTATTTATAGATTTTGTCAAATTTATTGATAAATACATTTTGTTAAAAATTAAGGATAAATAATAAGTTC

>Glyma06g00800.3   sequence type=transcript   gene model=Glyma06g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAATTAAGTTACTTGTTCTTAATTTCTGCTAATATATTGTATCGTCTGCGCTTGAGGACCAATCAGTGGAAGAAACCATGGCTGCCCAACCCAAACCTCAGAACCGACCCATTTCTAATATCGTCTTCGTCGTTGCTATGCAGACGGAGGCACTTCCCATCGTCAACAGATTCCAGCTCACTGAGGACCCTCACTCCCCATTTCCGCAAGGGGCTCCTTGGGTCCATTATCATGGGACATTCAAAGATCTCAATATAAACTTGATTTGGACTGGGAATGATCCAACTTTGGGGGTTGATAGTATAGGCACGATACCATCTGCTCTTGCAACATATGCTGCTATTCTAGCATTACAACCAGACTTGATCATCAATGCAGGCACCGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATATTTTTGTTGTATCGGAATGTGCTTTTCATGACAGAAGAATACCTATACCTAAGTTTTGCCGTCAACATCAATATGTGATGTCTTGCAGATTTTTGATCTGTATGGAGTGGGTCTTCGTAAAGCCTTTGAAACACCCAAACTTGTAAAGGAGCTTAATCTAAAGGTGGCTAAATTGTCTACTGGTGACTCTTTAGACATGACACAGCAGGATGGATCATTAATAATTGCAAATGATGCCACAGTTATAGATATGGAGGGAGCTGCTATTGCTTATGTTGCCGACCTACTGAAAGTTCCTGCAATTTTTATAAAAGCCGTGACTAATAACGTTGATGATGACAAAGCAATTGTAGAAGAATTCCTGCAGAATTTGGCAGCTCTAACTGTTGAACTTGGTCTGGCGGTCGAACAAGTTATTAATTTTATTAATGGAAAGTGCATATCTGAACTTTGACAACCCAATTTCACCTTATCCTAGAAGAATATATTTCAACGGGGAGAGCTGCGAAATGCCTTAACCTGACAAGTTTCCTATGTTACCAGATGGTAGCTCTAGTTTAAGATCCACTTATTGTGGTTACAGTATATACAGAATTTTTGTTTCACGACATACTTTATGGATCTTTAATCTTACCCTCCCCAAAAAAATATATTTCCAATCATTGGTTTTATTTATAGATTTTGTCAAATTTATTGATAAATACATTTTGTTAAAAATTAAGGATAAATAATAAGTTC

Coding sequences of Glyma06g00800

Limit To All Plant Sequences

>Glyma06g00800.1   sequence type=CDS   gene model=Glyma06g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCCAACCCAAACCTCAGAACCGACCCATTTCTAATATCGTCTTCGTCGTTGCTATGCAGACGGAGGCACTTCCCATCGTCAACAGATTCCAGCTCACTGAGGACCCTCACTCCCCATTTCCGCAAGGGGCTCCTTGGGTCCATTATCATGGGACATTCAAAGATCTCAATATAAACTTGATTTGGACTGGGAATGATCCAACTTTGGGGGTTGATAGTATAGGCACGATACCATCTGCTCTTGCAACATATGCTGCTATTCTAGCATTACAACCAGACTTGATCATCAATGCAGGCACCGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATATTTTTGTTGTATCGGAATGTGCTTTTCATGACAGAAGAATACCTATACCTATTTTTGATCTGTATGGAGTGGGTCTTCGTAAAGCCTTTGAAACACCCAAACTTGTAAAGGAGCTTAATCTAAAGGTGGCTAAATTGTCTACTGGTGACTCTTTAGACATGACACAGCAGGATGGATCATTAATAATTGCAAATGATGCCACAGTTATAGATATGGAGGGAGCTGCTATTGCTTATGTTGCCGACCTACTGAAAGTTCCTGCAATTTTTATAAAAGCCGTGACTAATAACGTTGATGATGACAAAGCAATTGTAGAAGAATTCCTGCAGAATTTGGCAGCTCTAACTGTTGAACTTGGTCTGGCGGTCGAACAAGTTATTAATTTTATTAATGGAAAGTGCATATCTGAACTTTGA

>Glyma06g00800.2   sequence type=CDS   gene model=Glyma06g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCCAACCCAAACCTCAGAACCGACCCATTTCTAATATCGTCTTCGTCGTTGCTATGCAGACGGAGGCACTTCCCATCGTCAACAGATTCCAGCTCACTGAGGACCCTCACTCCCCATTTCCGCAAGGGGCTCCTTGGGTCCATTATCATGGGACATTCAAAGATCTCAATATAAACTTGATTTGGACTGGGAATGATCCAACTTTGGGGGTTGATAGTATAGGCACGATACCATCTGCTCTTGCAACATATGCTGCTATTCTAGCATTACAACCAGACTTGATCATCAATGCAGGCACCGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATATTTTTGTTGTATCGGAATGTGCTTTTCATGACAGAAGAATACCTATACCTATTTTTGATCTGTATGGAGTGGGTCTTCGTAAAGCCTTTGAAACACCCAAACTTGTAAAGGAGCTTAATCTAAAGGGAGCTGCTATTGCTTATGTTGCCGACCTACTGAAAGTTCCTGCAATTTTTATAAAAGCCGTGACTAATAACGTTGATGATGACAAAGCAATTGTAGAAGAATTCCTGCAGAATTTGGCAGCTCTAACTGTTGAACTTGGTCTGGCGGTCGAACAAGTTATTAATTTTATTAATGGAAAGTGCATATCTGAACTTTGA

>Glyma06g00800.3   sequence type=CDS   gene model=Glyma06g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCCAACCCAAACCTCAGAACCGACCCATTTCTAATATCGTCTTCGTCGTTGCTATGCAGACGGAGGCACTTCCCATCGTCAACAGATTCCAGCTCACTGAGGACCCTCACTCCCCATTTCCGCAAGGGGCTCCTTGGGTCCATTATCATGGGACATTCAAAGATCTCAATATAAACTTGATTTGGACTGGGAATGATCCAACTTTGGGGGTTGATAGTATAGGCACGATACCATCTGCTCTTGCAACATATGCTGCTATTCTAGCATTACAACCAGACTTGATCATCAATGCAGGCACCGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATATTTTTGTTGTATCGGAATGTGCTTTTCATGACAGAAGAATACCTATACCTAAGTTTTGCCGTCAACATCAATATGTGATGTCTTGCAGATTTTTGATCTGTATGGAGTGGGTCTTCGTAAAGCCTTTGAAACACCCAAACTTGTAA

Predicted protein sequences of Glyma06g00800

Limit To All Plant Sequences

>Glyma06g00800.1   sequence type=predicted peptide   gene model=Glyma06g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAQPKPQNRPISNIVFVVAMQTEALPIVNRFQLTEDPHSPFPQGAPWVHYHGTFKDLNINLIWTGNDPTLGVDSIGTIPSALATYAAILALQPDLIINAGTAGGFKAKGASIGDIFVVSECAFHDRRIPIPIFDLYGVGLRKAFETPKLVKELNLKVAKLSTGDSLDMTQQDGSLIIANDATVIDMEGAAIAYVADLLKVPAIFIKAVTNNVDDDKAIVEEFLQNLAALTVELGLAVEQVINFINGKCISEL*

>Glyma06g00800.2   sequence type=predicted peptide   gene model=Glyma06g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAQPKPQNRPISNIVFVVAMQTEALPIVNRFQLTEDPHSPFPQGAPWVHYHGTFKDLNINLIWTGNDPTLGVDSIGTIPSALATYAAILALQPDLIINAGTAGGFKAKGASIGDIFVVSECAFHDRRIPIPIFDLYGVGLRKAFETPKLVKELNLKGAAIAYVADLLKVPAIFIKAVTNNVDDDKAIVEEFLQNLAALTVELGLAVEQVINFINGKCISEL*

>Glyma06g00800.3   sequence type=predicted peptide   gene model=Glyma06g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAQPKPQNRPISNIVFVVAMQTEALPIVNRFQLTEDPHSPFPQGAPWVHYHGTFKDLNINLIWTGNDPTLGVDSIGTIPSALATYAAILALQPDLIINAGTAGGFKAKGASIGDIFVVSECAFHDRRIPIPKFCRQHQYVMSCRFLICMEWVFVKPLKHPNL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain