Glyma06g00790 - SoyBase

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Report for Sequence Feature Glyma06g00790

Feature Type:	gene_model
Chromosome:	Gm06
Start:	450770
stop:	454853
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38800	AT	Annotation by Michelle Graham. TAIR10: methylthioadenosine nucleosidase 1 \| chr4:18113355-18114996 REVERSE LENGTH=267	SoyBase	E_val: 1.00E-126	ISS
GO:0000003	GO-bp	Annotation by Michelle Graham. GO Biological Process: reproduction	SoyBase	N/A	ISS
GO:0001944	GO-bp	Annotation by Michelle Graham. GO Biological Process: vasculature development	SoyBase	N/A	ISS
GO:0009116	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process	SoyBase	N/A	ISS
GO:0019509	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-methionine salvage from methylthioadenosine	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008930	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methylthioadenosine nucleosidase activity	SoyBase	N/A	ISS
PTHR21234	Panther	PURINE NUCLEOSIDE PHOSPHORYLASE	JGI		ISS
PTHR21234:SF5	Panther	MTA/SAH NUCLEOSIDASE	JGI		ISS
PF01048	PFAM	Phosphorylase superfamily	JGI		ISS
UniRef100_B6DX57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 5'-methylthioadenosine nucleosidase n=1 Tax=Lupinus luteus RepID=B6DX57_LUPLU	SoyBase	E_val: 1.00E-161	ISS
UniRef100_I1K708	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K708_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00790

Paralog	Evidence	Comments
Glyma04g00770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g005600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g00790

Limit To All Plant Sequences

>Glyma06g00790.2   sequence type=transcript   gene model=Glyma06g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGTCTCACCTTTTTTTATCTTTCATTTGTTAGCGCTACAAACTTTAACTTTAAGGGACAAAATAGTTATTTAGTCCTTATTTTATATAAATAAAGATAGAAGAGGAAAAGTCATAAAAAGCATAAGAATCTGCAACAAATAGTCATGGCTGCGCTTGGGGAACAATCAGAAGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTCAACAGATTTCAGCTCACCGAGGACCCTCACTCTCCGTTTCCGCGAGGGGTTCCTTGGGTTCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCTGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCATGACAGAAGAATACCCATACCTGTTTTTGATTTGTATGGAGTTGGTGTACGTAAAACCTTTGAAGCACCCAACCTTGTAAAGGAGCTTAATCTAAAGGTGGGTAAATTGTCTACTGGTGACTCTTTAGATATGACACAGCAGGATGAATCGTCAATCATTGCAAACGATGCCACAGTTAAAGATATGGAGCTATTGCTTATGTTTCTGACCTTTTGAAAGTTCCTGCAATGTTTGTAAAAGCTGTTACTGATATCATTGATGGTGACAAACCAACTGCAGAAGAATTCCTGCAAAATCTGGCAGCTGTAACTGCTGCACTTGATCTGGCAGTTGAACAAGTTATTAATTTTATTAATGGAAAGTGTGTATCTGAACTTTGACAACTCAATTTCACCTTACGAGTTTTTTCTGTATGCAATGTTACACGATGGGGTTCCATTGTACACTACTACCATTATTGGTTGGGAATTTGTGAGATTTAAGCAAAAATACAAACTTATAAACTGAAGATATTGCAGCCCCATCTCCCATCTCCCTTTTGTACTGTTCTGGCCTTGCAGGCTGTATAAGTTATCTGACAGATTGTGCAATCATTGTAAACATGTATGCTGACATACTTTAGTGAATCACATAAAGCAATATGGTTTTGATTGTTTGTCTCTGAAATTTCCCATGATGATGGAATGATTGAGTAACTTGATTTTAATAATGGAAGGCCCTACTTCATGGGTTCTGTTATTTGTT

Coding sequences of Glyma06g00790

Limit To All Plant Sequences

>Glyma06g00790.1   sequence type=CDS   gene model=Glyma06g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCGCTTGGGGAACAATCAGAAGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTCAACAGATTTCAGCTCACCGAGGACCCTCACTCTCCGTTTCCGCGAGGGGTTCCTTGGGTTCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCTGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCATGACAGAAGAATACCCATACCTGTTTTTGATTTGTATGGAGTTGGTGTACGTAAAACCTTTGAAGCACCCAACCTTGTAAAGGAGCTTAATCTAAAGGTGGGTAAATTGTCTACTGGTGACTCTTTAGATATGACACAGCAGGATGAATCGTCAATCATTGCAAACGATGCCACAGTTAAAGATATGGAGGGAGCAGCTATTGCTTATGTTTCTGACCTTTTGAAAGTTCCTGCAATGTTTGTAAAAGCTGTTACTGATATCATTGATGGTGACAAACCAACTGCAGAAGAATTCCTGCAAAATCTGGCAGCTGTAACTGCTGCACTTGATCTGGCAGTTGAACAAGTTATTAATTTTATTAATGGAAAGTGTGTATCTGAACTTTGA

>Glyma06g00790.2   sequence type=CDS   gene model=Glyma06g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCGCTTGGGGAACAATCAGAAGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTCAACAGATTTCAGCTCACCGAGGACCCTCACTCTCCGTTTCCGCGAGGGGTTCCTTGGGTTCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCTGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCATGACAGAAGAATACCCATACCTGTTTTTGATTTGTATGGAGTTGGTGTACGTAAAACCTTTGAAGCACCCAACCTTGTAAAGGAGCTTAATCTAAAGGTGGGTAAATTGTCTACTGGTGACTCTTTAGATATGACACAGCAGGATGAATCGTCAATCATTGCAAACGATGCCACAGTTAAAGATATGGAGCTATTGCTTATGTTTCTGACCTTTTGA

Predicted protein sequences of Glyma06g00790

Limit To All Plant Sequences

>Glyma06g00790.1   sequence type=predicted peptide   gene model=Glyma06g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALGEQSEEQAMAAQPKPQNRRPISNIVIVVAMQTEALPIVNRFQLTEDPHSPFPRGVPWVRYQGTYKDLNISLIWPGKDPTLGVDSVGTISSALVTYAAIQALQPDLIINAGTAGGFKAKGASIGDVFIVSDCAFHDRRIPIPVFDLYGVGVRKTFEAPNLVKELNLKVGKLSTGDSLDMTQQDESSIIANDATVKDMEGAAIAYVSDLLKVPAMFVKAVTDIIDGDKPTAEEFLQNLAAVTAALDLAVEQVINFINGKCVSEL*

>Glyma06g00790.2   sequence type=predicted peptide   gene model=Glyma06g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALGEQSEEQAMAAQPKPQNRRPISNIVIVVAMQTEALPIVNRFQLTEDPHSPFPRGVPWVRYQGTYKDLNISLIWPGKDPTLGVDSVGTISSALVTYAAIQALQPDLIINAGTAGGFKAKGASIGDVFIVSDCAFHDRRIPIPVFDLYGVGVRKTFEAPNLVKELNLKVGKLSTGDSLDMTQQDESSIIANDATVKDMELLLMFLTF*

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