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Report for Sequence Feature Glyma06g00781

Feature Type:gene_model
Chromosome:Gm06
Start:447400
stop:449936
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g00781
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21190AT Annotation by Michelle Graham. TAIR10: ER lumen protein retaining receptor family protein | chr2:9080916-9082642 FORWARD LENGTH=269 SoyBaseE_val: 5.00E-176ISS
GO:0006621GO-bp Annotation by Michelle Graham. GO Biological Process: protein retention in ER lumen SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0046923GO-mf Annotation by Michelle Graham. GO Molecular Function: ER retention sequence binding SoyBaseN/AISS
KOG3106 KOG ER lumen protein retaining receptor JGI ISS
PTHR10585Panther ER LUMEN PROTEIN RETAINING RECEPTOR-RELATED JGI ISS
PTHR10585:SF10Panther ER LUMEN PROTEIN RETAINING RECEPTOR JGI ISS
PF00810PFAM ER lumen protein retaining receptor JGI ISS
UniRef100_B9STD7UniRef Annotation by Michelle Graham. Most informative UniRef hit: ER lumen protein retaining receptor, putative n=1 Tax=Ricinus communis RepID=B9STD7_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233944CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233944C related cluster n=1 Tax=unknown RepID=UPI000233944C SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g00781
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g00781 not represented in the dataset
Glyma06g00781 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00781
ParalogEvidenceComments
Glyma04g00760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00781 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g005500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g00781
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g00781
>Glyma06g00781.1   sequence type=CDS   gene model=Glyma06g00781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAGTGGGAGAAAGTCGATCCACGCAATCACGACATGGGTGCGGCGGCAACCCCCAAAGGTCAAGGCTTTTCTCGCCGTCGTTTCCGGCATGGCGGCTCTCGTCCTTCTCCGCTTCATCGTTCACGATCACGACAACCTTTTCGTCACCGCCGAGGCTGTTCACTCTCTTGGAATTTCTGTTCTCATCTACAAACTCATCAAAGAAAAAACTTGTGCCGGATTATCACTCAAATCCCAGGAATTGACAGCTATATTTTTATCTGTTAGGTTGTACTGCAGTTTTGTCATGGAATATGATATACACACCCTGCTTGATTTGGCTACTTTGGTAACCACACTGTGGGTTATATACATGATTCGTTTTAAATTGAAGTCTAGTTACATGGAAGACAAAGACAATTTTGCTATATACTATGTGATGATACCCTGTGCTGTGTTAGCCTTGTTTATTCATCCATCAACTTCACATCATTTATTGAACAGGATTGCCTGGGCATTCTGTGTATATCTCGAAGCTGTGTCAGTACTGCCCCAACTCCGAGTCATGCAGAACACCAAAATTGTTGAGCCATTCACAGCACATTATGTATTTGCCCTGGGTGTCGCAAGATTCTTGAGCTGTGCTCATTGGGTTCTTCAGGTGTTAGATAGTCGTGGACATTTGTTGGTTGCCTTGGGGTATGGATTATGGCCGTCAATGGTGCTTATTTCAGAAATTGTCCAGACTTTTATCTTAGCAGATTTCTGCTACTATTATGTCAAAAGTGTTTTCGGGGGACAGTTTGTTCTCCGCCTACCTTCTGGAGTGGTGTGA
Predicted protein sequences of Glyma06g00781
>Glyma06g00781.1   sequence type=predicted peptide   gene model=Glyma06g00781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSGRKSIHAITTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVTAEAVHSLGISVLIYKLIKEKTCAGLSLKSQELTAIFLSVRLYCSFVMEYDIHTLLDLATLVTTLWVIYMIRFKLKSSYMEDKDNFAIYYVMIPCAVLALFIHPSTSHHLLNRIAWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQFVLRLPSGVV*






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