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Report for Sequence Feature Glyma06g00740

Feature Type:gene_model
Chromosome:Gm06
Start:426866
stop:427776
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g00740
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16600AT Annotation by Michelle Graham. TAIR10: rotamase CYP 3 | chr2:7200862-7201383 FORWARD LENGTH=173 SoyBaseE_val: 4.00E-110ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
KOG0865 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF161Panther ROC3 (ROTAMASE CYP 3), PEPTIDYL-PROLYL CIS-TRANS I JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
UniRef100_C6T429UniRef Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=C6T429_SOYBN SoyBaseE_val: 4.00E-122ISS
UniRef100_C6T429UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=C6T429_SOYBN SoyBaseE_val: 4.00E-122ISS

Expression Patterns of Glyma06g00740
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00740
ParalogEvidenceComments
Glyma04g00700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00740 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g005100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g00740
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g00740
>Glyma06g00740.1   sequence type=CDS   gene model=Glyma06g00740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGAACCCTAAGGTCTACTTCGACATGACCATCGGAGGCCAACCGGCCGGTCGCATAGTGATGGAGCTGTACGCCGACACGACCCCTCGCACCGCCGAGAATTTCCGCGCCCTTTGCACCGGCGAGAAGGGCGTGGGCCGCAGCGGCAAGCCCCTCCACTACAAGGGCTCCGCCTTCCACCGCGTCATTCCCAACTTCATGTGCCAGGGCGGTGACTTCACCGCCGGAAACGGCACCGGTGGCGAGTCCATCTACGGATCGAAGTTCGCGGACGAGAACTTCATAAAGAAGCACACGGGTCCCGGCATTCTATCGATGGCGAACGCGGGACCTGGCACGAACGGGTCTCAGTTCTTCATCTGCACCGTTAAGACGGAGTGGCTCGACGGAAAGCACGTGGTTTTCGGGCAGGTGGTGGAGGGCCTTGACGTCGTGAAGGACATCGAGAAGGTGGGTTCCAGCTCCGGTAAGACCTCCAAGCCCGTTGTTGTTGCTGACTCCGGACAACTCTCCTAG
Predicted protein sequences of Glyma06g00740
>Glyma06g00740.1   sequence type=predicted peptide   gene model=Glyma06g00740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPNPKVYFDMTIGGQPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSAFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFFICTVKTEWLDGKHVVFGQVVEGLDVVKDIEKVGSSSGKTSKPVVVADSGQLS*






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