Glyma06g00720 - SoyBase

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Report for Sequence Feature Glyma06g00720

Feature Type:	gene_model
Chromosome:	Gm06
Start:	414250
stop:	416751
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16630	AT	Annotation by Michelle Graham. TAIR10: Pollen Ole e 1 allergen and extensin family protein \| chr2:7209286-7210872 FORWARD LENGTH=359	SoyBase	E_val: 3.00E-98	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PF01190	PFAM	Pollen proteins Ole e I like	JGI		ISS
UniRef100_I1K703	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K703_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00720

Paralog	Evidence	Comments
Glyma04g00680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g004900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g00720

Limit To All Plant Sequences

>Glyma06g00720.1   sequence type=CDS   gene model=Glyma06g00720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGGCGGAGAAGCTTTTCTTTGCAGCATTTCTCATTCTTTCCGTGGCCATTGATGGAATGCAGGCAGACACTATGGTCACTGGCACTGTCTTCTGTGACCAATGCAAAGACGGACAGAGATCCCTTTTTGATTATCCTGTTAATGGTGCAAAAGTAATTCTGTCCTGTGCTGACAGTAATGGGCAAATTACAATGTCAAGAGAAGAAACAACAAACTGGTTTGGAAGCTATACAATGAGGTTCAATGGCGCACCCGACTTGAGTGGTTGTTCTGCCCATGTCTCAGGCAGTGGTGAAGGGTCAACAACGGGTTGTGGTGAAGGGGCTGGTCCTTCACAAAATCCTAAACTCATGTTTAGAATGTTTGACATGGAAATGTATACAGTGGATTCTCTCCTTGCTCAGCCCGCACAACCCATGCAGTACTGCTCAACATCTTCCAACCCAGTCCCAGCACCAGACACACCACCCAACTCTCCACCACATTTCAAGCTACCTCCAGTGCCTCCACTACCATCACTGCCACCACTTCCATCACTACCACCCCTGCCACCAGTGATTTTTGCAGAAGCTTCAGCATGTCCATCAGAGAAGTGGACACTGCCAGAATACAAATGCTACTGGAGAGGTGTGAACCGGGACACAAAAGTTGCAGTGGCTTTTGGAATGGTTGCGGCGAGAAGATACGGAACAGACATTACACTGTGGCATGGGTTGCAAGGGAGAGGAGACCCTTACAGGACTCTTCTCAGAGAAGGGATCACAGCACTTCTTAACTCCTATAACAGCTTTCAATTCTCTTATCATCCACTTGGCGTCGTCCAACACATGAATTTGGCTTTGATGGGCACAACTAGGAGTGTTCTACATACTGCTCTGCGCTTCAAGAGGGCCAATTCTGGTGCTGGAAATGTCACCTGCAAATTCACCACTTGCAAATAA

Predicted protein sequences of Glyma06g00720

Limit To All Plant Sequences

>Glyma06g00720.1   sequence type=predicted peptide   gene model=Glyma06g00720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLAEKLFFAAFLILSVAIDGMQADTMVTGTVFCDQCKDGQRSLFDYPVNGAKVILSCADSNGQITMSREETTNWFGSYTMRFNGAPDLSGCSAHVSGSGEGSTTGCGEGAGPSQNPKLMFRMFDMEMYTVDSLLAQPAQPMQYCSTSSNPVPAPDTPPNSPPHFKLPPVPPLPSLPPLPSLPPLPPVIFAEASACPSEKWTLPEYKCYWRGVNRDTKVAVAFGMVAARRYGTDITLWHGLQGRGDPYRTLLREGITALLNSYNSFQFSYHPLGVVQHMNLALMGTTRSVLHTALRFKRANSGAGNVTCKFTTCK*

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