Report for Sequence Feature Glyma06g00700
Feature Type: gene_model
Chromosome: Gm06
Start: 399137
stop: 401482
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g00700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G34940 AT
Annotation by Michelle Graham. TAIR10: armadillo repeat only 1 | chr4:16639760-16641754 FORWARD LENGTH=664
SoyBase E_val: 0 ISS
GO:0009827 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification
SoyBase N/A ISS
GO:0009860 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube growth
SoyBase N/A ISS
GO:0030036 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization
SoyBase N/A ISS
GO:0030048 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin filament-based movement
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0090404 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: pollen tube tip
SoyBase N/A ISS
PTHR23315 Panther
BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING
JGI ISS
PTHR23315:SF34 Panther
ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
JGI ISS
PF00514 PFAM
Armadillo/beta-catenin-like repeat
JGI ISS
UniRef100_Q9SW41 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Armadillo repeat only 1 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SW41_ARATH
SoyBase E_val: 0 ISS
UniRef100_UPI00023395D9 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023395D9 related cluster n=1 Tax=unknown RepID=UPI00023395D9
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g00700
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g00700
Paralog Evidence Comments
Glyma04g00670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g00700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g004700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g00700
Coding sequences of Glyma06g00700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g00700.1 sequence type=CDS gene model=Glyma06g00700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGAGCATCGTCAAGGAGATCCTGGCGAGCCCGATACAAATGGCGGACCAGGTTTCGAAGCTTGCGGAAGAGGCCCAGAATTTCCGACAGGAATGTCTGGAACTGAAATCCAAAACTGAGAAGCTGGCGGGCCTCCTCCGCCAGGCCGCCAGGAACAGCAACGACCTCTACGAGCGTCCCACGCGCCGCATCATCGACGACACCGAACAAGTCCTCGACAAGGCCCTCGTTCTCGTCACCAAATGTCGCGCCAACAGCCTCATCAAGAAGCTCTTCACCATCATCCCCGCCACAGCCTTCCGCAAGACCTCCATGCAGCTCGAGAATTCCGTCGGTGACGTCCAATGGCTCCTCCGCGTCTCTGCCTCCGCCGACGAGCGCGACGACGAGTACCTCGGCCTCCCTCCCATCGCCGCCAACGAGCCCATCCTCTGCCTCATCTGGGAACAGGTCGCCATTCTTCTCTCCGGCGCTTCCTTGGACGAACGTTCCGACGCTGCCGCTTCCCTCGTCTCCCTCGCTCGCGACAACGACCGTTACGGGAAACTCATCATCGAAGAAGGAGGCGTGCCACCGCTGTTGAAGCTTCTCAAGGAAGGAAGAATGGACGGTCAGGAAAACGCTGCCAGAGCCATCGGGTTGCTTGGGAAAGATCCTGAAAGCGTGGAACACATTGTCAATGCTGGTGTCTGTTCCGTGTTTGCCAAGGTCCTCAAAGAAGGCCACATGAAGGTTCAAACGGTTGTTGCGTGGGCTATTTCTGAACTCGCCGCGAATCACCCGAAATGCCAGGATCATTTTTCTCAGAACAATGCCATACGCTTGCTGGTTAGCCATCTGGCGTTTGAGACAATTCAAGAGCATAGCAAGTACGCCATTGCGAACAAACACAAATCCATTCACTCGGTTTTAATGGCGAGTAACACAACGAGCGCGCAGGAAGAGGAAGATGATAAGCAGATGGTGGCTCACCCGGGGGCGAATCAGTCAGCCAATCTGATGCACAACGTGGTTTCCAACACAATGGCCATAAAGGGAGCCATGGTGGAGGAGGAGAAAGCCAACAACAAGAAGCAACAACAACAACAGCAGCAGCAGCAGCAGAGTGGGAATAATTCGCAAATGTCAATTGCAGGGACGAGTATTAAGGGGAGGGAATATGAAGACGCGGGGACAAAGGCACAGATGAAGGCCATGGCAGCCAGAGCCTTATGGCAACTCTCGAGGGGAAACTTGACAGTGTGTAGGAGCATAACAGAGTCAAGGGCTCTCTTGTGTTTCGCGGTTCTGTTGGAAAAAGGACCAGACGATGTGCAATCGTATTCGGCAATGGCGTTGATGGAAATCACTGCAGTGTCGGAGCAACATTCGGAGCTGAGGCGCTCTGCTTTCAAGCCAACTTCCCCGGCAGCCAAGGCAGTGGTGGATCAACTCCTAAAAGTAATCGAAAAAGAACAACCGGACCTGCTCATAGCTTGCGTGAGATCAGTGGGAAATTTGGCGAGGACATTCAGAGCAACCGAAACAAGACTCATAGGGCCGTTGGTGAGGCTTCTGGACGAAAGAGAGGCGCAGGTTAGCATGGAAGCGGCCATTGCGCTCAATAAATTTGCTTGTACGGACAACTACCTTCATGAGAATCACTGCAACGCCATCATAGAGGCAGGGGGCGCCAAGCACTTGATTCAACTCGTTTACTTTGGGGAGCAAATGGTTCAGATTCCTTCCGTCACGCTGCTTTGTTACATAGCGCTGCACGTCCCCAAAAGCGAGACTCTGGCGCAAGAAGAGGTGCTCATTGTTCTCGAATGGTGCACCAAGCAGGCACATCTCATCGAGGAACCCTCCATCCAACCACTCTTACCAGAGGCCAAGAGCAGGCTCGAACTCTATCAATCAAGAGGAAGAGGATTCCGCTGA
Predicted protein sequences of Glyma06g00700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g00700.1 sequence type=predicted peptide gene model=Glyma06g00700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSIVKEILASPIQMADQVSKLAEEAQNFRQECLELKSKTEKLAGLLRQAARNSNDLYERPTRRIIDDTEQVLDKALVLVTKCRANSLIKKLFTIIPATAFRKTSMQLENSVGDVQWLLRVSASADERDDEYLGLPPIAANEPILCLIWEQVAILLSGASLDERSDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLLKEGRMDGQENAARAIGLLGKDPESVEHIVNAGVCSVFAKVLKEGHMKVQTVVAWAISELAANHPKCQDHFSQNNAIRLLVSHLAFETIQEHSKYAIANKHKSIHSVLMASNTTSAQEEEDDKQMVAHPGANQSANLMHNVVSNTMAIKGAMVEEEKANNKKQQQQQQQQQQSGNNSQMSIAGTSIKGREYEDAGTKAQMKAMAARALWQLSRGNLTVCRSITESRALLCFAVLLEKGPDDVQSYSAMALMEITAVSEQHSELRRSAFKPTSPAAKAVVDQLLKVIEKEQPDLLIACVRSVGNLARTFRATETRLIGPLVRLLDEREAQVSMEAAIALNKFACTDNYLHENHCNAIIEAGGAKHLIQLVYFGEQMVQIPSVTLLCYIALHVPKSETLAQEEVLIVLEWCTKQAHLIEEPSIQPLLPEAKSRLELYQSRGRGFR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
