Glyma06g00680 - SoyBase

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Report for Sequence Feature Glyma06g00680

Feature Type:	gene_model
Chromosome:	Gm06
Start:	375957
stop:	379498
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38650	AT	Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family 10 protein \| chr4:18063377-18065769 FORWARD LENGTH=562	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PF00331	PFAM	Glycosyl hydrolase family 10	JGI		ISS
UniRef100_G7J8H6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endo-1,4-beta-xylanase A n=1 Tax=Medicago truncatula RepID=G7J8H6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K6Z9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6Z9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00680

Paralog	Evidence	Comments
Glyma04g00610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g004400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g00680

Limit To All Plant Sequences

>Glyma06g00680.1   sequence type=CDS   gene model=Glyma06g00680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGATATCCCCTTCTGTAGCCTTATAGTTTTCTTCTTTCTAATAGGGGCTTCTTTGGTTTCCCCTTTATATGATGGGCCCCTATATGACTCCACTGCCTACACTGAGTGCAAAGAGAAGCCAGAGGAACCACTTTATGGAGGAGGACTTTTCAAGACTGAGCAACACTCTCGTCGTGGCAGCATTGCCAACAACAGCTATGTGCCTTCACTTGTTCTGTATAATCTCACTCAGGGCACCATTTACTCTTTTTCCGCATGGGTGAGAGTTAAAGATTCAAGTTCAGCTATGATAAGGACCACTCTGGAAACGGAGAAAGAGACACATGATTGCATTGGGACAGTTTCGGCCAAGCATAGATGCTGGTCATTTCTGAAGGGTGGATTTGTTCTGAATTGGCCTTCAAATTTATCCATTATCTTCTTCCAGAACGCTGATGGTAAAGATATCAATATAGATGTTGCTAGCCCATCACTCCAGCCATTTACTAAGCAACAATGGAGAATCAATCAACAGTATATAATCAACACTCAAAGAAAGCGTGCCGTCACTATTCATGTGTCAGATAGTAACGGAAGGAGATTGGAAGGAGCTTCGATCTGTGTAGAGCAAATCTCAAAAGACTTCCCTTTTGGATCTGCAATAGCAAAGACCATTCTTGGCAACGTTCCCTACCAGAATTGGTTTGTGAAGCGGTTCAACGCGGCAGTGTTTGAAAATGAGCTCAAATGGTACGCCACAGAACCTGATCAAGGCAAGGTCAATTACACCATTTCAGACCAGATGCTGCAATTTGTTAGAACAAACAACATCATAGCGAGAGGGCACAACATATTTTGGGAAGACCCTAAATACACTCCTCCGTGGGTTCTTAACCTTACAGGCACCCAGTTACAATCTGCTGTGAATTCTCGAATACATAGTCTCATGAGCCAATACAAAGATGAGTTCGTACACTGGGACGTCAGCAATGAAATGCTCCATTTTGATTTCTACGAGGAAAGGCTTGGACCTAATGCCACATTGCATTTCTTTCAGACAGCACATAAATCGGATCCATTGGCAACTCTGTTTATGAATGACTTCAATGTTGTGGAAACATGCAGTGATGTAAAATCCACTGTTGACGCCTATATCTCACGGGTAAGAGAACTGCAACGAAATGGCATCTTTATGGATGGAATTGGCTTGGAGGGTCACTTCACAATACCCAATCCTCCCCTTATCAGAGCCATCCTAGACAAGTTGGCAACACTTGGCCTTCCCATTTGGCTTACCGAGGTGGATATAAGCAAGACACTTGATAGAGATGCACAGGCAAATTATTCGGAGGAAGTGCTGAGGGAAGGCTTCTCACATCCCTCTGTGAATGGGATAATGCTTTGGACGGCATTACATCCAAATGGGTGCTACCAAATGTGCCTGACAGACAATAATTTCAAGAACCTCCCAGCAGGTGATGCGGTGGACAAACTTCTTCAAGAGTGGCAAACGGGTCGTGTAGAGGGAGTCTCAGATGTGCACGGTTCCTATAGCTTTTATGGGTTCTTAGGAGAATACAGAATTAGTGTCAAGTATGGCAATAACACTACAAAGTCAACATTCTCCCTCTCTCGAGGTGATGAAACTAGACATTTCACTATTACAATATGA

Predicted protein sequences of Glyma06g00680

Limit To All Plant Sequences

>Glyma06g00680.1   sequence type=predicted peptide   gene model=Glyma06g00680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQDIPFCSLIVFFFLIGASLVSPLYDGPLYDSTAYTECKEKPEEPLYGGGLFKTEQHSRRGSIANNSYVPSLVLYNLTQGTIYSFSAWVRVKDSSSAMIRTTLETEKETHDCIGTVSAKHRCWSFLKGGFVLNWPSNLSIIFFQNADGKDINIDVASPSLQPFTKQQWRINQQYIINTQRKRAVTIHVSDSNGRRLEGASICVEQISKDFPFGSAIAKTILGNVPYQNWFVKRFNAAVFENELKWYATEPDQGKVNYTISDQMLQFVRTNNIIARGHNIFWEDPKYTPPWVLNLTGTQLQSAVNSRIHSLMSQYKDEFVHWDVSNEMLHFDFYEERLGPNATLHFFQTAHKSDPLATLFMNDFNVVETCSDVKSTVDAYISRVRELQRNGIFMDGIGLEGHFTIPNPPLIRAILDKLATLGLPIWLTEVDISKTLDRDAQANYSEEVLREGFSHPSVNGIMLWTALHPNGCYQMCLTDNNFKNLPAGDAVDKLLQEWQTGRVEGVSDVHGSYSFYGFLGEYRISVKYGNNTTKSTFSLSRGDETRHFTITI*

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