Glyma06g00560 - SoyBase

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Report for Sequence Feature Glyma06g00560

Feature Type:	gene_model
Chromosome:	Gm06
Start:	271041
stop:	275908
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47900	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1624) \| chr5:19392408-19394963 FORWARD LENGTH=440	SoyBase	E_val: 3.00E-128	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07786	PFAM	Protein of unknown function (DUF1624)	JGI		ISS
UniRef100_G7J8J5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heparan-alpha-glucosaminide N-acetyltransferase n=1 Tax=Medicago truncatula RepID=G7J8J5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K6Y3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K6Y3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g00560 not represented in the dataset	Glyma06g00560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g00560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g003300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g00560

Limit To All Plant Sequences

>Glyma06g00560.2   sequence type=transcript   gene model=Glyma06g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGACATTGAGCAGCATAAGCATGTTTGTTCTTAGGTTCTCACGCTCACATCCTTTGCATTCTTAGTCAACACCAAAAACCAAACTGAAACTGGAACAATAGAGCATCTTTCCTAGTTTTGTCTCAAATCAAACAACTCTGACGGAGGATACTGCTATTGCTCCGCCTGAATCTCCATGGCTGATCCACAGCCGCTGCTTCTCAACGATTCCGAGCCAACTCAATTTCAAAACACCCGAATCGCCTCCCTTGACGTCTTTCGCGGCCTCTCTGTTTTTGTAATTAACTAGCTCTTTTCTTTCTTTCTTTCTTTGCTTTCTACCCAATAAATTCTATTTCTTCCTTTCTTGAATTTCTTTCAGCTTATGATATTTGTGGATTATGCTGCTTCCATCTTCCCCATCATTGCTCATGCCCCCTGGAATGGGATTCACTTGGCTGATTTCGTCATGCCTTTTTTTCTTTTCATTGCTGGAATTTCTCTTGCCCTCGTTTATAAGAGAAGGCCTCATAGAACCCAAGCTACATGGAAAGCTTTTGCTAGAGCTCTCAACCTCTTTGCTCTTGGTATTCTTCTTCAAGGTGGCTATTTTCACGGAGTTACTTCCTTGACTTTTGGTGTTGACATTCAAAGAATTCGGTGGCTGGGCATTTTACAGAGGATATCTATTGGATACATTGTTGCAGCTTTATGCGAGATCTGGCTTCCAGCTCCACGATGGAAAGAATTAGGTTTCGTCAAAAGTTACTACTGGCAATGGTTTGTTGCAGTAATATTGTTGGCACTTTACTCTGGATTACTGTATGGTCTATATGTTCCAGATTGGCAGTTTGATGTATCAGCCTCGACCTCTTCATTGCCTCCTATTGGTGGTGGTGATATTTACATGGTGAATTGTTCAGTGAGAGGTGATCTTGGACCTGCCTGTAATTCTGCTGGAATGATTGATCGCTATATTCTTGGTCTTGACCATCTGTATAGAAAGCCTGTTTACAGAAATCTCAAGGGGTGCAATATGTCTGCTAAGGGTCAAGTTTCAGATAGTTCACCTTCATGGTGTCATGCTCCTTTTGACCCAGAAGGCATTTTAAGCTCCATAACAGCTGCAGTTTCGTGCATAATTGGACTTCAGTATGGTCACGTTCTTGCCCATCTACAGGACCACAAAGGGCGCCTATACAACTGGATGTGTTTTTCCCTTTCATTTTTGGCTCTTGGACTGTTTCTGGCATTAATAGGAATTCCTCTAAATAAATCGCTGTACACAGTCAGTTATATGCTACTAACTTCTGCAGCTTCTGGTCTCACATTCATTGCTTTATATTTTCTGGTAGATGTTCATGGTCACAGGCGTTTGACAGCGTTGTTGGAGTGGATGGGAAAACACTCCTTGAGTATATTTGTCATCGTATCTTCAAACTTGGCCGTGATTGCTGTTCAAGGATTTTATTGGACTAAACCCGAAAACAACATTATAAACTGGATTGTGACACGTTTTGACCACACATAACGTCCTCGTATTCAACTGCTGTTACATTTTCATGCCTCGTCTTGCATGGTGTATATATTCAAAGTAAAGCGACGAAAAGAGGATCAAGATCCAGCCGTAAGTGCTTATTGAATTGTATAGGTATAGGTATACTATCGAATTTTGCATGAATTCAACAATCTCTTTTCATTACGTACTATTAGTGAGCCTTGGTAGTGCAATAGTCCTCACGCTCACACCCTTTTCTGTTGGGCTGGCCCAGGTCGTGTTGTCCTAAAAGAATTACATGGGTACCAAACAAAATAATTATTACATAGTTCCTTGCAACTCGGATTTCTTCTCACGCGTAGGCGTGGGACATGTTCGATAAACTGGAATGTTTATATATATATATATATATATAAAAGAAAATATTTTGCTTTTA

>Glyma06g00560.3   sequence type=transcript   gene model=Glyma06g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGACATTGAGCAGCATAAGCATGTTTGTTCTTAGGTTCTCACGCTCACATCCTTTGCATTCTTAGTCAACACCAAAAACCAAACTGAAACTGGAACAATAGAGCATCTTTCCTAGTTTTGTCTCAAATCAAACAACTCTGACGGAGGATACTGCTATTGCTCCGCCTGAATCTCCATGGCTGATCCACAGCCGCTGCTTCTCAACGATTCCGAGCCAACTCAATTTCAAAACACCCGAATCGCCTCCCTTGACGTCTTTCGCGGCCTCTCTGTTTTTCTTATGATATTTGTGGATTATGCTGCTTCCATCTTCCCCATCATTGCTCATGCCCCCTGGAATGGGATTCACTTGGCTGATTTCGTCATGCCTTTTTTTCTTTTCATTGCTGGAATTTCTCTTGCCCTCGTTTATAAGAGAAGGCCTCATAGAACCCAAGCTACATGGAAAGCTTTTGCTAGAGCTCTCAACCTCTTTGCTCTTGGTATTCTTCTTCAAGGTGGCTATTTTCACGGAGTTACTTCCTTGACTTTTGGTGTTGACATTCAAAGAATTCGGTGGCTGGGCATTTTACAGAGGATATCTATTGGATACATTGTTGCAGCTTTATGCGAGATCTGGCTTCCAGCTCCACGATGGAAAGAATTAGGTTTCGTCAAAAGTTACTACTGGCAATGGTTTGTTGCAGTAATATTGTTGGCACTTTACTCTGGATTACTGTATGGTCTATATGTTCCAGATTGGCAGTTTGATGTATCAGCCTCGACCTCTTCATTGCCTCCTATTGGTGGTGGTGATATTTACATGGTGAATTGTTCAGTGAGAGGTGATCTTGGACCTGCCTGTAATTCTGCTGGAATGATTGATCGCTATATTCTTGGTCTTGACCATCTGTATAGAAAGCCTGTTTACAGAAATCTCAAGGGGTGCAATATGTCTGCTAAGGGTCAAGTTTCAGATAGTTCACCTTCATGGTGTCATGCTCCTTTTGACCCAGAAGGCATTTTAAGCTCCATAACAGCTGCAGTTTCGTGCATAATTGGACTTCAGTATGGTCACGTTCTTGCCCATCTACAGGACCACAAAGGGCGCCTATACAACTGGATGTGTTTTTCCCTTTCATTTTTGGCTCTTGGACTGTTTCTGGCATTAATAGGAATTCCTCTAAATAAATCGCTGTACACAGTCAGTTATATGCTACTAACTTCTGCAGCTTCTGGTCTCACATTCATTGCTTTATATTTTCTGATGTTCATGGTCACAGGCGTTTGACAGCGTTGTTGGAGTGGATGGGAAAACACTCCTTGAGTATATTTGTCATCGTATCTTCAAACTTGGCCGTGATTGCTGTTCAAGGATTTTATTGGACTAAACCCGAAAACAACATTATAAACTGGATTGTGACACGTTTTGACCACACATAACGTCCTCGTATTCAACTGCTGTTACATTTTCATGCCTCGTCTTGCATGGTGTATATATTCAAAGTAAAGCGACGAAAAGAGGATCAAGATCCAGCCGTAAGTGCTTATTGAATTGTATAGGTATAGGTATACTATCGAATTTTGCATGAATTCAACAATCTCTTTTCATTACGTACTATTAGTGAGCCTTGGTAGTGCAATAGTCCTCACGCTCACACCCTTTTCTGTTGGGCTGGCCCAGGTCGTGTTGTCCTAAAAGAATTACATGGGTACCAAACAAAATAATTATTACATAGTTCCTTGCAACTCGGATTTCTTCTCACGCGTAGGCGTGGGACATGTTCGATAAACTGGAATGTTTATATATATATATATATATATAAAAGAAAATATTTTGCTTTTA

Coding sequences of Glyma06g00560

Limit To All Plant Sequences

>Glyma06g00560.1   sequence type=CDS   gene model=Glyma06g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATCCACAGCCGCTGCTTCTCAACGATTCCGAGCCAACTCAATTTCAAAACACCCGAATCGCCTCCCTTGACGTCTTTCGCGGCCTCTCTGTTTTTCTTATGATATTTGTGGATTATGCTGCTTCCATCTTCCCCATCATTGCTCATGCCCCCTGGAATGGGATTCACTTGGCTGATTTCGTCATGCCTTTTTTTCTTTTCATTGCTGGAATTTCTCTTGCCCTCGTTTATAAGAGAAGGCCTCATAGAACCCAAGCTACATGGAAAGCTTTTGCTAGAGCTCTCAACCTCTTTGCTCTTGGTATTCTTCTTCAAGGTGGCTATTTTCACGGAGTTACTTCCTTGACTTTTGGTGTTGACATTCAAAGAATTCGGTGGCTGGGCATTTTACAGAGGATATCTATTGGATACATTGTTGCAGCTTTATGCGAGATCTGGCTTCCAGCTCCACGATGGAAAGAATTAGGTTTCGTCAAAAGTTACTACTGGCAATGGTTTGTTGCAGTAATATTGTTGGCACTTTACTCTGGATTACTGTATGGTCTATATGTTCCAGATTGGCAGTTTGATGTATCAGCCTCGACCTCTTCATTGCCTCCTATTGGTGGTGGTGATATTTACATGGTGAATTGTTCAGTGAGAGGTGATCTTGGACCTGCCTGTAATTCTGCTGGAATGATTGATCGCTATATTCTTGGTCTTGACCATCTGTATAGAAAGCCTGTTTACAGAAATCTCAAGGGGTGCAATATGTCTGCTAAGGGTCAAGTTTCAGATAGTTCACCTTCATGGTGTCATGCTCCTTTTGACCCAGAAGGCATTTTAAGCTCCATAACAGCTGCAGTTTCGTGCATAATTGGACTTCAGTATGGTCACGTTCTTGCCCATCTACAGGACCACAAAGGGCGCCTATACAACTGGATGTGTTTTTCCCTTTCATTTTTGGCTCTTGGACTGTTTCTGGCATTAATAGGAATTCCTCTAAATAAATCGCTGTACACAGTCAGTTATATGCTACTAACTTCTGCAGCTTCTGGTCTCACATTCATTGCTTTATATTTTCTGGTAGATGTTCATGGTCACAGGCGTTTGACAGCGTTGTTGGAGTGGATGGGAAAACACTCCTTGAGTATATTTGTCATCGTATCTTCAAACTTGGCCGTGATTGCTGTTCAAGGATTTTATTGGACTAAACCCGAAAACAACATTATAAACTGGATTGTGACACGTTTTGACCACACATAA

>Glyma06g00560.2   sequence type=CDS   gene model=Glyma06g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATATTTGTGGATTATGCTGCTTCCATCTTCCCCATCATTGCTCATGCCCCCTGGAATGGGATTCACTTGGCTGATTTCGTCATGCCTTTTTTTCTTTTCATTGCTGGAATTTCTCTTGCCCTCGTTTATAAGAGAAGGCCTCATAGAACCCAAGCTACATGGAAAGCTTTTGCTAGAGCTCTCAACCTCTTTGCTCTTGGTATTCTTCTTCAAGGTGGCTATTTTCACGGAGTTACTTCCTTGACTTTTGGTGTTGACATTCAAAGAATTCGGTGGCTGGGCATTTTACAGAGGATATCTATTGGATACATTGTTGCAGCTTTATGCGAGATCTGGCTTCCAGCTCCACGATGGAAAGAATTAGGTTTCGTCAAAAGTTACTACTGGCAATGGTTTGTTGCAGTAATATTGTTGGCACTTTACTCTGGATTACTGTATGGTCTATATGTTCCAGATTGGCAGTTTGATGTATCAGCCTCGACCTCTTCATTGCCTCCTATTGGTGGTGGTGATATTTACATGGTGAATTGTTCAGTGAGAGGTGATCTTGGACCTGCCTGTAATTCTGCTGGAATGATTGATCGCTATATTCTTGGTCTTGACCATCTGTATAGAAAGCCTGTTTACAGAAATCTCAAGGGGTGCAATATGTCTGCTAAGGGTCAAGTTTCAGATAGTTCACCTTCATGGTGTCATGCTCCTTTTGACCCAGAAGGCATTTTAAGCTCCATAACAGCTGCAGTTTCGTGCATAATTGGACTTCAGTATGGTCACGTTCTTGCCCATCTACAGGACCACAAAGGGCGCCTATACAACTGGATGTGTTTTTCCCTTTCATTTTTGGCTCTTGGACTGTTTCTGGCATTAATAGGAATTCCTCTAAATAAATCGCTGTACACAGTCAGTTATATGCTACTAACTTCTGCAGCTTCTGGTCTCACATTCATTGCTTTATATTTTCTGGTAGATGTTCATGGTCACAGGCGTTTGACAGCGTTGTTGGAGTGGATGGGAAAACACTCCTTGAGTATATTTGTCATCGTATCTTCAAACTTGGCCGTGATTGCTGTTCAAGGATTTTATTGGACTAAACCCGAAAACAACATTATAAACTGGATTGTGACACGTTTTGACCACACATAA

>Glyma06g00560.3   sequence type=CDS   gene model=Glyma06g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATCCACAGCCGCTGCTTCTCAACGATTCCGAGCCAACTCAATTTCAAAACACCCGAATCGCCTCCCTTGACGTCTTTCGCGGCCTCTCTGTTTTTCTTATGATATTTGTGGATTATGCTGCTTCCATCTTCCCCATCATTGCTCATGCCCCCTGGAATGGGATTCACTTGGCTGATTTCGTCATGCCTTTTTTTCTTTTCATTGCTGGAATTTCTCTTGCCCTCGTTTATAAGAGAAGGCCTCATAGAACCCAAGCTACATGGAAAGCTTTTGCTAGAGCTCTCAACCTCTTTGCTCTTGGTATTCTTCTTCAAGGTGGCTATTTTCACGGAGTTACTTCCTTGACTTTTGGTGTTGACATTCAAAGAATTCGGTGGCTGGGCATTTTACAGAGGATATCTATTGGATACATTGTTGCAGCTTTATGCGAGATCTGGCTTCCAGCTCCACGATGGAAAGAATTAGGTTTCGTCAAAAGTTACTACTGGCAATGGTTTGTTGCAGTAATATTGTTGGCACTTTACTCTGGATTACTGTATGGTCTATATGTTCCAGATTGGCAGTTTGATGTATCAGCCTCGACCTCTTCATTGCCTCCTATTGGTGGTGGTGATATTTACATGGTGAATTGTTCAGTGAGAGGTGATCTTGGACCTGCCTGTAATTCTGCTGGAATGATTGATCGCTATATTCTTGGTCTTGACCATCTGTATAGAAAGCCTGTTTACAGAAATCTCAAGGGGTGCAATATGTCTGCTAAGGGTCAAGTTTCAGATAGTTCACCTTCATGGTGTCATGCTCCTTTTGACCCAGAAGGCATTTTAAGCTCCATAACAGCTGCAGTTTCGTGCATAATTGGACTTCAGTATGGTCACGTTCTTGCCCATCTACAGGACCACAAAGGGCGCCTATACAACTGGATGTGTTTTTCCCTTTCATTTTTGGCTCTTGGACTGTTTCTGGCATTAATAGGAATTCCTCTAAATAAATCGCTGTACACAGTCAGTTATATGCTACTAACTTCTGCAGCTTCTGGTCTCACATTCATTGCTTTATATTTTCTGATGTTCATGGTCACAGGCGTTTGA

Predicted protein sequences of Glyma06g00560

Limit To All Plant Sequences

>Glyma06g00560.1   sequence type=predicted peptide   gene model=Glyma06g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPQPLLLNDSEPTQFQNTRIASLDVFRGLSVFLMIFVDYAASIFPIIAHAPWNGIHLADFVMPFFLFIAGISLALVYKRRPHRTQATWKAFARALNLFALGILLQGGYFHGVTSLTFGVDIQRIRWLGILQRISIGYIVAALCEIWLPAPRWKELGFVKSYYWQWFVAVILLALYSGLLYGLYVPDWQFDVSASTSSLPPIGGGDIYMVNCSVRGDLGPACNSAGMIDRYILGLDHLYRKPVYRNLKGCNMSAKGQVSDSSPSWCHAPFDPEGILSSITAAVSCIIGLQYGHVLAHLQDHKGRLYNWMCFSLSFLALGLFLALIGIPLNKSLYTVSYMLLTSAASGLTFIALYFLVDVHGHRRLTALLEWMGKHSLSIFVIVSSNLAVIAVQGFYWTKPENNIINWIVTRFDHT*

>Glyma06g00560.2   sequence type=predicted peptide   gene model=Glyma06g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIFVDYAASIFPIIAHAPWNGIHLADFVMPFFLFIAGISLALVYKRRPHRTQATWKAFARALNLFALGILLQGGYFHGVTSLTFGVDIQRIRWLGILQRISIGYIVAALCEIWLPAPRWKELGFVKSYYWQWFVAVILLALYSGLLYGLYVPDWQFDVSASTSSLPPIGGGDIYMVNCSVRGDLGPACNSAGMIDRYILGLDHLYRKPVYRNLKGCNMSAKGQVSDSSPSWCHAPFDPEGILSSITAAVSCIIGLQYGHVLAHLQDHKGRLYNWMCFSLSFLALGLFLALIGIPLNKSLYTVSYMLLTSAASGLTFIALYFLVDVHGHRRLTALLEWMGKHSLSIFVIVSSNLAVIAVQGFYWTKPENNIINWIVTRFDHT*

>Glyma06g00560.3   sequence type=predicted peptide   gene model=Glyma06g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPQPLLLNDSEPTQFQNTRIASLDVFRGLSVFLMIFVDYAASIFPIIAHAPWNGIHLADFVMPFFLFIAGISLALVYKRRPHRTQATWKAFARALNLFALGILLQGGYFHGVTSLTFGVDIQRIRWLGILQRISIGYIVAALCEIWLPAPRWKELGFVKSYYWQWFVAVILLALYSGLLYGLYVPDWQFDVSASTSSLPPIGGGDIYMVNCSVRGDLGPACNSAGMIDRYILGLDHLYRKPVYRNLKGCNMSAKGQVSDSSPSWCHAPFDPEGILSSITAAVSCIIGLQYGHVLAHLQDHKGRLYNWMCFSLSFLALGLFLALIGIPLNKSLYTVSYMLLTSAASGLTFIALYFLMFMVTGV*

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