Glyma06g00550 - SoyBase

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Report for Sequence Feature Glyma06g00550

Feature Type:	gene_model
Chromosome:	Gm06
Start:	264301
stop:	266025
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35100	AT	Annotation by Michelle Graham. TAIR10: plasma membrane intrinsic protein 3 \| chr4:16708672-16709958 FORWARD LENGTH=280	SoyBase	E_val: 3.00E-125	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0046658	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
KOG0223	KOG	Aquaporin (major intrinsic protein family)	JGI		ISS
PTHR19139	Panther	AQUAPORIN TRANSPORTER	JGI		ISS
PTHR19139:SF50	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00230	PFAM	Major intrinsic protein	JGI		ISS
UniRef100_B2M0U5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin n=1 Tax=Manihot esculenta RepID=B2M0U5_MANES	SoyBase	E_val: 1.00E-129	ISS
UniRef100_I1K6Y1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6Y1_SOYBN	SoyBase	E_val: 5.00E-138	ISS

Expression Patterns of Glyma06g00550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g00550 not represented in the dataset	Glyma06g00550 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00550

Paralog	Evidence	Comments
Glyma04g00450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g003200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g00550

Limit To All Plant Sequences

>Glyma06g00550.4   sequence type=transcript   gene model=Glyma06g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAATGTATGTTTAAATACTAAGAAAACAACAAGAACAGCAGGGGTATTTTTTGTCGTGAGATGTTTGTTGACAGCTGCTACCATTCTCCTATTGTTTTATGAATTTTGGAAGGAAAAATAGTAATAAGAGAGAGAGATGAGCGTTGTAATAGGGGTTGGGTTGGCTCACATGTCCCAGTCTCTTTCCAACTCTACTAGTCTAAGTTTGTAACTCTTGTTGATTCCAAAGTTGCACACCACACTCAACTTACCGTTCCTTTTCCTCTCCCATAAAACCAGCAAGCAACTCACTCCCACACTCACCCCAGTCAAGAGAGAGAATGTCGAAGGAAGTGAGCCAAGAAGGCCTGCAGAGGAAGGACTACGTAGACCCTCCTCCAGCCCCTCTTTTCGACCTTGCCGAGATCAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATTGCCTCACTCCTCTTCCTCTACGTCACCGTCGCCACCATCATCGGCCACAAGAAACAGACCGGACCATGCGACGGCGTTGGCCTTCTCGGCATCGCATGGTCCTTCGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCTGGTGGACACATCAACCCTGCGGTGACTTTTGGCCTGTTCCTGGCCCGCAAGGTGTCTCTCATTCGCGCCGTGTTCTACATGGTAGCACAGTGTCTTGGTGCCATCTGCGGTGTTGGGTTGGTGAAGGCCTTCATGAAGCACTCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTCAGCGCAGGCTACAACAAAGGCAGTGCTCTGGGTGCTGAGATTATCGGCACTTTCGTCCTTGTCTACACCGTTTTCTCAGCTACCGACCCCAAGAGAAGCGTGTTGGCCCCATTGCCCATTGGGTTTGCCGTTTTCATGGTTCACTTGGCCACCATTCCCATCACCGGTACCGGGATCAACCCAGCCAGGAGCTTGGGTGCAGCTGTTATCTACAACAATGGCAAAGTTTGGGACGAGCATTGGATATTCTGGGTTGGGCCATTGGTGGGAGCTTTGGCGGCGGCGGCATACCACCAGTACATCCTTAGAGCAGGGGCTATTAAGGCCTTGGGTTCATTCAGGAGCAACCCTACCAACTAGTTCCCAAGACAATGTCATCATCACCAATTCGCCTCTTCTTTTCTATTTATTTCTTTTGTTTGTATGAGAGATCATCATGCCCTTGTGTATGGGGATAATTCGTCTTTTTTTCTTCTTCCTTCCTTTTATCTCCCCGCCTGTCTCATTTGTCCGTTCGCTTACACTTCTAACCAAAATTCCCGTGAACACAACCCACAGGGTTTGCTGTCGGAATGTGAACCTTTTTCGCTTGCGTTCAATTATGCCAAGAATTTTCTAGCTAACATGGGTATATAACTCCTATATTTATGCTGCAAAATAGATAAATAAAAAACTACCTATTCGCACATTATCAACGTTTTAT

Coding sequences of Glyma06g00550

Limit To All Plant Sequences

>Glyma06g00550.3   sequence type=CDS   gene model=Glyma06g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCTGGTGGACACATCAACCCTGCGGTGACTTTTGGCCTGTTCCTGGCCCGCAAGGTGTCTCTCATTCGCGCCGTGTTCTACATGGTAGCACAGTGTCTTGGTGCCATCTGCGGTGTTGGGTTGGTGAAGGCCTTCATGAAGCACTCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTCAGCGCAGGCTACAACAAAGGCAGTGCTCTGGGTGCTGAGATTATCGGCACTTTCGTCCTTGTCTACACCGTTTTCTCAGCTACCGACCCCAAGAGAAGCGCGCGTGACTCCCATGTCCCCGTGTTGGCCCCATTGCCCATTGGGTTTGCCGTTTTCATGGTTCACTTGGCCACCATTCCCATCACCGGTACCGGGATCAACCCAGCCAGGAGCTTGGGTGCAGCTGTTATCTACAACAATGGCAAAGTTTGGGACGAGCATTGGATATTCTGGGTTGGGCCATTGGTGGGAGCTTTGGCGGCGGCGGCATACCACCAGTACATCCTTAGAGCAGGGGCTATTAAGGCCTTGGGTTCATTCAGGAGCAACCCTACCAACTAG

>Glyma06g00550.4   sequence type=CDS   gene model=Glyma06g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCTGGTGGACACATCAACCCTGCGGTGACTTTTGGCCTGTTCCTGGCCCGCAAGGTGTCTCTCATTCGCGCCGTGTTCTACATGGTAGCACAGTGTCTTGGTGCCATCTGCGGTGTTGGGTTGGTGAAGGCCTTCATGAAGCACTCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTCAGCGCAGGCTACAACAAAGGCAGTGCTCTGGGTGCTGAGATTATCGGCACTTTCGTCCTTGTCTACACCGTTTTCTCAGCTACCGACCCCAAGAGAAGCGTGTTGGCCCCATTGCCCATTGGGTTTGCCGTTTTCATGGTTCACTTGGCCACCATTCCCATCACCGGTACCGGGATCAACCCAGCCAGGAGCTTGGGTGCAGCTGTTATCTACAACAATGGCAAAGTTTGGGACGAGCATTGGATATTCTGGGTTGGGCCATTGGTGGGAGCTTTGGCGGCGGCGGCATACCACCAGTACATCCTTAGAGCAGGGGCTATTAAGGCCTTGGGTTCATTCAGGAGCAACCCTACCAACTAG

Predicted protein sequences of Glyma06g00550

Limit To All Plant Sequences

>Glyma06g00550.3   sequence type=predicted peptide   gene model=Glyma06g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVFYMVAQCLGAICGVGLVKAFMKHSYNSLGGGANSVSAGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNGKVWDEHWIFWVGPLVGALAAAAYHQYILRAGAIKALGSFRSNPTN*

>Glyma06g00550.4   sequence type=predicted peptide   gene model=Glyma06g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVFYMVAQCLGAICGVGLVKAFMKHSYNSLGGGANSVSAGYNKGSALGAEIIGTFVLVYTVFSATDPKRSVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNGKVWDEHWIFWVGPLVGALAAAAYHQYILRAGAIKALGSFRSNPTN*

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