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Report for Sequence Feature Glyma06g00536

Feature Type:gene_model
Chromosome:Gm06
Start:257907
stop:260614
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g00536
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35110AT Annotation by Michelle Graham. TAIR10: Arabidopsis phospholipase-like protein (PEARLI 4) family | chr4:16712660-16714225 REVERSE LENGTH=401 SoyBaseE_val: 4.00E-41ISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR21704Panther NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED JGI ISS
PTHR21704:SF12Panther UNKNOWN PROTEIN JGI ISS
PF05278PFAM Arabidopsis phospholipase-like protein (PEARLI 4) JGI ISS
UniRef100_A8MQE1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase-like (PEARLI 4) family protein n=2 Tax=Arabidopsis thaliana RepID=A8MQE1_ARATH SoyBaseE_val: 2.00E-38ISS
UniRef100_I1K6Y0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6Y0_SOYBN SoyBaseE_val: 1.00E-169ISS

Expression Patterns of Glyma06g00536
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g00536 not represented in the dataset
Glyma06g00536 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00536
ParalogEvidenceComments
Glyma04g00441 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00536 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g003100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g00536
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g00536
>Glyma06g00536.1   sequence type=CDS   gene model=Glyma06g00536   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCAACTGTGTAAATCTTTCTAATCCTTACCATCAATGTACCCAAGCTTGCTCCCAAACCACCATCAAGACGTCGCACTCCCACATAAACAAAAACAAGACTTCAGGTTATGGCCCAAGTGTCACAGATGCTCAGCTTGGAAAAAAGATCAATAATAAACACAATCAAAACGTACGAACGTACCCAGGTTGTCCTAAAGCATCCAATCCTTACCACCAGTGTGATCACAATTGTTACAAAAGATTATCCGATTCAGGTGCTCCTCCTCCTATAAAGCTGGACAAGAAAAAGAAGTTAGGTTCAAAACCAGAACCCCCTGTTCTTGACAGTGTTCCTGCCTCAAAAGTTGGGGCAATTTACCTATCTGATGCTTCATCACCAATATCACAGTATTCCGAGAAGAAAAAGGTGGAGACAGAAAACAATGAGCACGTTTCTCCTCAGACAAATATCCAAGCTGTAAAGCCTGTCAATAACAAAGACCAACCAATTAAGGAGGGTGAGCAGCACGTTGGGAACCCAATGCTAACAAATGATGATGAGGACAAAATTGCTTCTAATAAAATTGTTCCAATCAGCCTTCCTATTTCAGAAAGTGATGATGATGAGTCTGTGATGAGTTCTGAAGGCCGTCTTCAAGTTGGAAGATATCAAATAAAAGAAAGTTTTGGTTCCATCTTGCAATCTATCCTTGACAAGTACGGGGACATAGGAGAAAGCTGTCAGTTGGAATCGGTTGCCATGCGCTCATATTACATTGAGTGTGTATGCTTTGTGGTGCAAGAGTTACATAATTCCTCATCGATAATGCAATTAAGCAAGTCCAAAGTCAAGGAATTATTGGCTATTCTTAAGGATGTTGAATCTGCACAACTTGGTGTGGCTTGGTTGCGTAGCGCCCTCGATGAACTAGCTCAAAATATTGAACTCATTAATAGGCACCAGGAGGTAGAGGCACAAAAGGATAACTCTGGTCGCCAAGTGGAGTCATTGAGACAAGAGCTAGAAACAGAGTTGGAAAGTTTGGCTCAGAAAGAACAAGAGGTTGCCAATATTAAAACACGAATTCCTGAGATCAGAGGTCGTTTGAGCCAGCTCCAGCTCAAGTCAGAAGAACTCAACAGAAGCATGCTATCTATCAAGTCCAAGGTTCATAATTTGCATATCAAATCTTTGGTGGATGAACTATTATAA
Predicted protein sequences of Glyma06g00536
>Glyma06g00536.1   sequence type=predicted peptide   gene model=Glyma06g00536   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNCVNLSNPYHQCTQACSQTTIKTSHSHINKNKTSGYGPSVTDAQLGKKINNKHNQNVRTYPGCPKASNPYHQCDHNCYKRLSDSGAPPPIKLDKKKKLGSKPEPPVLDSVPASKVGAIYLSDASSPISQYSEKKKVETENNEHVSPQTNIQAVKPVNNKDQPIKEGEQHVGNPMLTNDDEDKIASNKIVPISLPISESDDDESVMSSEGRLQVGRYQIKESFGSILQSILDKYGDIGESCQLESVAMRSYYIECVCFVVQELHNSSSIMQLSKSKVKELLAILKDVESAQLGVAWLRSALDELAQNIELINRHQEVEAQKDNSGRQVESLRQELETELESLAQKEQEVANIKTRIPEIRGRLSQLQLKSEELNRSMLSIKSKVHNLHIKSLVDELL*






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