Glyma06g00500 - SoyBase

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Report for Sequence Feature Glyma06g00500

Feature Type:	gene_model
Chromosome:	Gm06
Start:	225411
stop:	228437
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12760	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:7504876-7506091 FORWARD LENGTH=258	SoyBase	E_val: 3.00E-78	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K6X6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6X6_SOYBN	SoyBase	E_val: 4.00E-178	ISS
UniRef100_Q4SB95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromosome undetermined SCAF14676, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4SB95_TETNG	SoyBase	E_val: 2.00E-10	ISS

Expression Patterns of Glyma06g00500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00500

Paralog	Evidence	Comments
Glyma04g00410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g002800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g00500

Limit To All Plant Sequences

>Glyma06g00500.2   sequence type=transcript   gene model=Glyma06g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAATATTAGTGAGTCTTGAAGTAAGTAATTTGGAGAGGGAAAAACGCAACCTAGCGGCAGCGGAAGGGTGGCGCGTGAGAGAGATGGAGGAAGGTAAAGAATGGAGCGTGAAAGAGAAGAACGAAACTACGACGCGACCATCCCTAAAATCGGATGTTCCATTCAACAAATATGAACTATGGAAACACAAGTTGAGGGACAATTGCTACAAAAGGGTGCGAGAGGACAGAACTCGCTTACTCTGGAAATTTAGATACAACCAACAGGAGGAGGAGGACATCGTCAAGTGTGCATTCCAGGATATTGTATCTGATGAATTGAACAAAATCAAACGCACGGATGAGCTGTTATGGGAGTATGAAGGTCCTCACCAGGGTGAATGCCAAGACATTTTGTTAGAAATGCAAAGGATCTTTTATCAAGATCTCAATTCCCAATCAACCATACAAGGCAACCTACTTACTCTCAAATTTTCCATATTCCTCTCATTTAATATTATACATACATATATATATATATATATATATATATATATATATATATATATATCAATAAGTGAATCTCCCTGCAGATTTAGAATGTGATATTGAAACTTGGGAAGATGAAGTGGATGAGTACCTGGCTCGTGCAGTTTTTGAGCATATGCAGCTAAATGAAGATGAGGCTCATGGGAAAGAGATTTGGTGTCCTATATGTAAGCAAGGAGAGCTTAAAGACAGTCACAATCTTATACACTGCACTCGTTGTGAACTTCAACTAAACAAAGCTAGTGAGCTTACTTTGGACTTTTTACGGGACCGGCTGGCTGAAGCCCACACAGAGCATCTTGATAAAGGTTGCAGATTGAAACCCAAATTTTGTATGAGGACAAAGTTTAATTTAACTGCACTGTACATTTCATGTGAAGGTTGTGATACATTTGAGGTTGTAATTTAACAGTTTCGTTATTATTTGTTATATAAATATCTGATCAGCGTATGTCAAAAAATTTCCCTATCTTGTTTTGCTTC

>Glyma06g00500.3   sequence type=transcript   gene model=Glyma06g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAATATTAGTGAGTCTTGAAGTAAGTAATTTGGAGAGGGAAAAACGCAACCTAGCGGCAGCGGAAGGGTGGCGCGTGAGAGAGATGGAGGAAGGTAAAGAATGGAGCGTGAAAGAGAAGAACGAAACTACGACGCGACCATCCCTAAAATCGGATGTTCCATTCAACAAATATGAACTATGGAAACACAAGTTGAGGGACAATTGCTACAAAAGGGTGCGAGAGGACAGAACTCGCTTACTCTGGAAATTTAGATACAACCAACAGGAGGAGGAGGACATCGTCAAGTGTGCATTCCAGGATATTGTATCTGATGAATTGAACAAAATCAAACGCACGGATGAGCTGTTATGGGAGTATGAAGGTCCTCACCAGGGTGAATGCCAAGACATTTTGTTAGAAATGCAAAGGATCTTTTATCAAGATCTCAATTCCCAATCAACCATACAAGATTTAGAATGTGATATTGAAACTTGGGAAGATGAAGTGGATGAGTACCTGGCTCGTGCAGTTTTTGAGCATATGCAGCTAAATGAAGATGAGGCTCATGGGAAAGAGATTTGGTGTCCTATATGTAAGCAAGGAGAGCTTAAAGACAGTCACAATCTTATACACTGCACTCGTTGTGAACTTCAACTAAACAAAGCTAGTGAGGTGAACAGTTTGTGGCTGCTGGAATGAAGTTCCATCGATGTACAATTGATTGAAGCATGATGTCCAAGCTATTTGTGCCTACAGCCCAAAAATAGCTCCCACTCCTCCCATGTCAAACACAATCTTTTTATTTGTTTATAGTAAGAGCAGTATACACCCGTGAGAAAAGATTGAGATATTTGAGTGTATCTCAGCTTTGTGATTTGGGTGAAATATAATATTTTGTAATCACCATTCACCACAATGATCGTTAATTGAATATATACGATAGTCATATCTGCATGTGGTTATAAGTTGTAAAAGCTGAATTACATTTGTTCTTACACTTTCGCTTTATTTACACAATTATTATCACACAATCTTTTTCTTCTGAGATTCAGCTTACTTTGGACTTTTTACGGGACCGGCTGGCTGAAGCCCACACAGAGCATCTTGATAAAGGTTGCAGATTGAAACCCAAATTTTGTATGAGGACAAAGTTTAATTTAACTGCACTGTACATTTCATGTGAAGGTTGTGATACATTTGAGGTTGTAATTTAACAGTTTCGTTATTATTTGTTATATAAATATCTGATCAGCGTATGTCAAAAAATTTCCCTATCTTGTTTTGCTTC

Coding sequences of Glyma06g00500

Limit To All Plant Sequences

>Glyma06g00500.1   sequence type=CDS   gene model=Glyma06g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGGTAAAGAATGGAGCGTGAAAGAGAAGAACGAAACTACGACGCGACCATCCCTAAAATCGGATGTTCCATTCAACAAATATGAACTATGGAAACACAAGTTGAGGGACAATTGCTACAAAAGGGTGCGAGAGGACAGAACTCGCTTACTCTGGAAATTTAGATACAACCAACAGGAGGAGGAGGACATCGTCAAGTGTGCATTCCAGGATATTGTATCTGATGAATTGAACAAAATCAAACGCACGGATGAGCTGTTATGGGAGTATGAAGGTCCTCACCAGGGTGAATGCCAAGACATTTTGTTAGAAATGCAAAGGATCTTTTATCAAGATCTCAATTCCCAATCAACCATACAAGATTTAGAATGTGATATTGAAACTTGGGAAGATGAAGTGGATGAGTACCTGGCTCGTGCAGTTTTTGAGCATATGCAGCTAAATGAAGATGAGGCTCATGGGAAAGAGATTTGGTGTCCTATATGTAAGCAAGGAGAGCTTAAAGACAGTCACAATCTTATACACTGCACTCGTTGTGAACTTCAACTAAACAAAGCTAGTGAGCTTACTTTGGACTTTTTACGGGACCGGCTGGCTGAAGCCCACACAGAGCATCTTGATAAAGGTTGCAGATTGAAACCCAAATTTTGTATGAGGACAAAGTTTAATTTAACTGCACTGTACATTTCATGTGAAGGTTGTGATACATTTGAGGTTGTAATTTAA

>Glyma06g00500.2   sequence type=CDS   gene model=Glyma06g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGGTAAAGAATGGAGCGTGAAAGAGAAGAACGAAACTACGACGCGACCATCCCTAAAATCGGATGTTCCATTCAACAAATATGAACTATGGAAACACAAGTTGAGGGACAATTGCTACAAAAGGGTGCGAGAGGACAGAACTCGCTTACTCTGGAAATTTAGATACAACCAACAGGAGGAGGAGGACATCGTCAAGTGTGCATTCCAGGATATTGTATCTGATGAATTGAACAAAATCAAACGCACGGATGAGCTGTTATGGGAGTATGAAGGTCCTCACCAGGGTGAATGCCAAGACATTTTGTTAGAAATGCAAAGGATCTTTTATCAAGATCTCAATTCCCAATCAACCATACAAGGCAACCTACTTACTCTCAAATTTTCCATATTCCTCTCATTTAATATTATACATACATATATATATATATATATATATATATATATATATATATATATATCAATAAGTGAATCTCCCTGCAGATTTAGAATGTGA

>Glyma06g00500.3   sequence type=CDS   gene model=Glyma06g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGGTAAAGAATGGAGCGTGAAAGAGAAGAACGAAACTACGACGCGACCATCCCTAAAATCGGATGTTCCATTCAACAAATATGAACTATGGAAACACAAGTTGAGGGACAATTGCTACAAAAGGGTGCGAGAGGACAGAACTCGCTTACTCTGGAAATTTAGATACAACCAACAGGAGGAGGAGGACATCGTCAAGTGTGCATTCCAGGATATTGTATCTGATGAATTGAACAAAATCAAACGCACGGATGAGCTGTTATGGGAGTATGAAGGTCCTCACCAGGGTGAATGCCAAGACATTTTGTTAGAAATGCAAAGGATCTTTTATCAAGATCTCAATTCCCAATCAACCATACAAGATTTAGAATGTGATATTGAAACTTGGGAAGATGAAGTGGATGAGTACCTGGCTCGTGCAGTTTTTGAGCATATGCAGCTAAATGAAGATGAGGCTCATGGGAAAGAGATTTGGTGTCCTATATGTAAGCAAGGAGAGCTTAAAGACAGTCACAATCTTATACACTGCACTCGTTGTGAACTTCAACTAAACAAAGCTAGTGAGGTGAACAGTTTGTGGCTGCTGGAATGA

Predicted protein sequences of Glyma06g00500

Limit To All Plant Sequences

>Glyma06g00500.1   sequence type=predicted peptide   gene model=Glyma06g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGKEWSVKEKNETTTRPSLKSDVPFNKYELWKHKLRDNCYKRVREDRTRLLWKFRYNQQEEEDIVKCAFQDIVSDELNKIKRTDELLWEYEGPHQGECQDILLEMQRIFYQDLNSQSTIQDLECDIETWEDEVDEYLARAVFEHMQLNEDEAHGKEIWCPICKQGELKDSHNLIHCTRCELQLNKASELTLDFLRDRLAEAHTEHLDKGCRLKPKFCMRTKFNLTALYISCEGCDTFEVVI*

>Glyma06g00500.2   sequence type=predicted peptide   gene model=Glyma06g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGKEWSVKEKNETTTRPSLKSDVPFNKYELWKHKLRDNCYKRVREDRTRLLWKFRYNQQEEEDIVKCAFQDIVSDELNKIKRTDELLWEYEGPHQGECQDILLEMQRIFYQDLNSQSTIQGNLLTLKFSIFLSFNIIHTYIYIYIYIYIYIYISISESPCRFRM*

>Glyma06g00500.3   sequence type=predicted peptide   gene model=Glyma06g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGKEWSVKEKNETTTRPSLKSDVPFNKYELWKHKLRDNCYKRVREDRTRLLWKFRYNQQEEEDIVKCAFQDIVSDELNKIKRTDELLWEYEGPHQGECQDILLEMQRIFYQDLNSQSTIQDLECDIETWEDEVDEYLARAVFEHMQLNEDEAHGKEIWCPICKQGELKDSHNLIHCTRCELQLNKASEVNSLWLLE*

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