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Report for Sequence Feature Glyma06g00480

Feature Type:gene_model
Chromosome:Gm06
Start:216556
stop:220096
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06980AT Annotation by Michelle Graham. TAIR10: DEA(D/H)-box RNA helicase family protein | chr3:2201531-2204662 FORWARD LENGTH=781 SoyBaseE_val: 0ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006399GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process SoyBaseN/AISS
GO:0006655GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
KOG0331 KOG ATP-dependent RNA helicase JGI ISS
PTHR24031Panther FAMILY NOT NAMED JGI ISS
PTHR24031:SF128Panther SUBFAMILY NOT NAMED JGI ISS
PF00270PFAM DEAD/DEAH box helicase JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
UniRef100_Q6ZND7UniRef Annotation by Michelle Graham. Most informative UniRef hit: cDNA FLJ16192 fis, clone BRTHA2017364, weakly similar to ATP-DEPENDENT RNA HELICASE T26G10.1 IN CHROMOSOME III n=1 Tax=Homo sapiens RepID=Q6ZND7_HUMAN SoyBaseE_val: 0ISS
UniRef100_UPI0001B83755UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B83755 related cluster n=1 Tax=unknown RepID=UPI0001B83755 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma04g00390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g002600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g00480.1   sequence type=CDS   gene model=Glyma06g00480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTTGGGCAGCTTGTTCCTTCGAATTTGTTCCTGAATCGTTCTGCTGCGACCAGACACAGACACCTTCTTTGTGTTTCTGCAAATGACACAACCTCAACCAATAACACGGATAACGGTTCTCCATTCTCAAGTTTCGGAAGACTCAAGGCCCAGAAAGTGAAGACTCTCCTGGTCCACAGAAGAGGAAAGGACCAAAGCCATAGACGCCCCGTTCACCTTGAAGATGATGATGATTATGTAGCCACCCCTAGACCCCGACGCTCTCAGTCTCGTACACGAGGAGGAGAAAGATGGGATATGATTCCCAATTATACTCCACCGGCACAAAGCAAATCGGTGAGCGACACCAAGTTTTTCAGCCTCAAGTCCTTTAAAGAAATAGGGTGCAGTGAGTATATGATTGAATCCCTCCAAAAACTCTTGTTTAGCCGGCCTTCCCATGTACAGGCCATGGCATTCACACCTGTTATTAGTGGAAAGACTTGTGTCATTGCTGACCAGAGTGGTTCTGGTAAGACATTTGCTTATCTGGCTCCTATCATTCAGCGCCTTAGACAACAAGAGCTTGAAGGAATTATTAGTAAATCCTCTTCACAAGCTCCTAGTCCTAGAGTCCTTGTTCTTGCACCAACTGCTGAGTTGGCTTCTCAGGTCTTAGATAATTGTCGCTCCTTGTCTAAATCTGGCGTTCCATTCAAGTCTATGGTTGTCACCGGTGGTTTTCGACAAAAAACTCAACTGGAAAATTTACAGCAGGGAGTTGATGTCTTAATAGCTACACCTGGCCGTTTTCTGTTCCTCATCAATCAAGGCTTCTTGCATTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATCCTTGATCAATTCATCACCAGTTGACACACAGTATTTATTTGTGACTGCAACTTTACCTAAAAATGTTTACACCAAATTGGTTGAAGTTTTTCCTGATTGTGAAATGATTATGGGGCCTGGCATGCACCGAATAAGTTCTCGCCTTCAAGAGATTATAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAACTGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACCTGCAGAAAAGTTGAAAATTTATTAAAGCGTTTTGATAGAAAAGGAAATTGCGTGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGGAAGAGTTTACACGTTCTCCATCAAAAGGAGTCTCCCAGTTTATGGTTTGCACCGACAGAGCATCACGGGGAATAGATTTTGCAAGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTACGACGGGTTGGAAGAACAGCCAGAGGTGCCAAGGGAGTGGGCAAGGCATTTATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCAGAAGGGTCACCCACTACATGATGTGCCTTCGGCTTATTAG

>Glyma06g00480.1   sequence type=predicted peptide   gene model=Glyma06g00480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVGQLVPSNLFLNRSAATRHRHLLCVSANDTTSTNNTDNGSPFSSFGRLKAQKVKTLLVHRRGKDQSHRRPVHLEDDDDYVATPRPRRSQSRTRGGERWDMIPNYTPPAQSKSVSDTKFFSLKSFKEIGCSEYMIESLQKLLFSRPSHVQAMAFTPVISGKTCVIADQSGSGKTFAYLAPIIQRLRQQELEGIISKSSSQAPSPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLINQGFLHLTNLRCAVLDEVDILFGDEDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEIIVDCSGEDGQEKTPDTAFLNKKTALLQLVEESPVPRTIVFCNKIETCRKVENLLKRFDRKGNCVQVLPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFARVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPSAY*







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