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Report for Sequence Feature Glyma06g00380

Feature Type:gene_model
Chromosome:Gm06
Start:150324
stop:151898
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g00380
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17670AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:5821082-5822600 FORWARD LENGTH=309 SoyBaseE_val: 2.00E-137ISS
GO:0006505GO-bp Annotation by Michelle Graham. GO Biological Process: GPI anchor metabolic process SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0031227GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PF07819PFAM PGAP1-like protein JGI ISS
UniRef100_I1K6W6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6W6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9FN84UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FN84_ARATH SoyBaseE_val: 8.00E-135ISS

Expression Patterns of Glyma06g00380
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g00380 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g001500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g00380
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g00380
>Glyma06g00380.1   sequence type=CDS   gene model=Glyma06g00380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCGGCATTGTCGTCCATCTCTCCAAAGAGCTCAAGCGCATCATCACTGCCACTGCTTTCATCCTCCAACAACTATCGCCCTGCCGTTATTCTCCCAGGCTTAGGGAACAACTCCGGTGACTACCAGAGTTTGAAGCAAACGCTGAACGACAAGTACGGCGTGGCCACCGTGGTGGCCAAGGTGTCGAGGCTTGATTGGTTCCGCAACGCTGCTGGTTTGCTCGACCGCAATTATTGGCGTGGCACTCTGCTACCCAGACCTGTCCTCGATTGGTATTTGGAGAGGGTTCACGATGCTGTTCAAGAGGCTAAGGAGGGTGCTGCAAATGGAACTGTGTCTTTGATTGGACACTCGGCAGGAGGATGGCTCGCGCGTGTCTATATGGAAGAATTTGGAGTGTCCAACGATATATCCCTCTTATTGACCCTTGGAACTCCTCATCTACCACCCCCGAAAGGCGTGCAAGGGGTTATTGATCAAACGCGGGGTCTCCTTGATTATGTTGAACAAAATTGCTCCAAACCTGTTTACACCCCTCAGGCTCAAGTCAAGTATGTATGTATAGCAGGAAGGTATATTAAAGGAGCAAGGCTTTTTGGCAACTCCAATCCAAATCCAGATATTGAGGGCGAGGCTCAGCTAGTATCCGATGCTGCTATTCTCACCACCTATCCATCTAAATCTAATACAACATTACGTGCTCGCTTTGTGGGGCAAGGATACAAACAGGTTTGTGGCCAAGCAGATGTATGGGGCGATGGTGTTGTACCAGAAGTATCAGCTCATCTTGAGGGTGCACTTAACATTAGCTTCCATGGAGTTTATCACTCGCCAGTTGGTGCAGATGATGCAACCAGACCATGGTATGGTTCACCTCATGTCTTGGACCAATGGGTACAACACCTTCTTAATTAA
Predicted protein sequences of Glyma06g00380
>Glyma06g00380.1   sequence type=predicted peptide   gene model=Glyma06g00380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAALSSISPKSSSASSLPLLSSSNNYRPAVILPGLGNNSGDYQSLKQTLNDKYGVATVVAKVSRLDWFRNAAGLLDRNYWRGTLLPRPVLDWYLERVHDAVQEAKEGAANGTVSLIGHSAGGWLARVYMEEFGVSNDISLLLTLGTPHLPPPKGVQGVIDQTRGLLDYVEQNCSKPVYTPQAQVKYVCIAGRYIKGARLFGNSNPNPDIEGEAQLVSDAAILTTYPSKSNTTLRARFVGQGYKQVCGQADVWGDGVVPEVSAHLEGALNISFHGVYHSPVGADDATRPWYGSPHVLDQWVQHLLN*






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