Glyma06g00370 - SoyBase

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Report for Sequence Feature Glyma06g00370

Feature Type:	gene_model
Chromosome:	Gm06
Start:	137503
stop:	146566
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19260	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr2:8357331-8359931 FORWARD LENGTH=631	SoyBase	E_val: 1.00E-56	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10615	Panther	MYST-RELATED PROTEINS	JGI		ISS
PTHR10615:SF72	Panther	OS04G0425100 PROTEIN (FRAGMENT)	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
UniRef100_G7J542	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PHD and RING finger domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J542_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339471	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339471 related cluster n=1 Tax=unknown RepID=UPI0002339471	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00370

Paralog	Evidence	Comments
Glyma04g00320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g001400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g00370

Limit To All Plant Sequences

>Glyma06g00370.1   sequence type=CDS   gene model=Glyma06g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAATACAAACTTCTGTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGATCGGATGCCTAGTGGTGAAACTTGGCAGGTGGGTCTGAAATGCAATAAGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTAGAAGAAGATAAAAGGAATGCTGATGATCCTTACAGATCAAGCTGTTTAGTTAGCTTTGGTCAGCCGTCAACTGCTAGTATAATGACAGAAAATACTACACCTAATATGGTATACAGGAGAAAGAAGCTCTGTAAGGACTCAAATTTCGACCTAGGGCCAACTAATGTGCAGGCAAGTGCAAACTGCCCTTCAGTCATAAGTTCCGCTGCACATTTATCATCAGCGGAGGATCAGCCAACTGGTTTTCAAGTTAAGCATGAAATTGAAATGGTTAAAGATCCTACCATGCCTTCAGTCTTATTTGATAGAGTAGCCAAAGATAGCACACATAAAAACTTAGGTATTAATAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAAATATGGAAACTGAAATGGATGAAACTGGTGAATGCTCCTCCAGTATAATAGTCATGGATTGCACAAGGGAAGAAGTAACAGAAAAGGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTCTTAAAGAAGATTCCCCTGTAGATAATGTGGCTTCTGGGGAAGATGCTGTTACCACTGGTAATAACTGCTGTTCCAGGTCATGCAAAATATGTGGTGATTTAGACAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCTGTCTTGCTACAATCCACGTTTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAGAGGCAGAAAATTCTCAAGGAGACAGTTATCAGATCACCAAGTATCCACAATGAATTGGGCAAATGTAGAACTGCCCCAGTTAAGGCTGAATTGAATCCCATACTGTTGATGTTAAGAGACACCAAGCCCTATACAACTGGTGTGCGAGTTGGTAAAGGTTTTCAAGCAGAAGTTCTTGACTGGTCAGGCCCGATGAAAAGTGATGAAGATGCCCTTCCTGAACCATTGGAAATTAGTCCTTCAGAATTTTATAAATTGCTGGGAGAGAATATGAGAAATCCTACTAAACTTAGTTCCATTGGTAATTGGATTAAATGTCAGGAGGTTTTAGATAGAGCCAATGAAACTATATGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTTCAAACTGATGACTGGGATTGCTTTTGTGCTATCCATTGGAATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTACTGAAGCAACTGAAGTATATAGAAATGCTACGGCCTCGACTTGCTGCTAAGCGGAAAAAATCAGATTGCACACATAATAGTGAATGA

Predicted protein sequences of Glyma06g00370

Limit To All Plant Sequences

>Glyma06g00370.1   sequence type=predicted peptide   gene model=Glyma06g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIQTSVLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVGLKCNKYPLDWCRKAEPVEEDKRNADDPYRSSCLVSFGQPSTASIMTENTTPNMVYRRKKLCKDSNFDLGPTNVQASANCPSVISSAAHLSSAEDQPTGFQVKHEIEMVKDPTMPSVLFDRVAKDSTHKNLGINSVNDSCSSSKPNMETEMDETGECSSSIIVMDCTREEVTEKDFCINILRSHGLLKEDSPVDNVASGEDAVTTGNNCCSRSCKICGDLDSSLNMLLCDHCEDAYHLSCYNPRLKKLPIDEWFCHSCLKKRQKILKETVIRSPSIHNELGKCRTAPVKAELNPILLMLRDTKPYTTGVRVGKGFQAEVLDWSGPMKSDEDALPEPLEISPSEFYKLLGENMRNPTKLSSIGNWIKCQEVLDRANETICGKWRRAPLFEVQTDDWDCFCAIHWNPSHADCAVPQELETDQVLKQLKYIEMLRPRLAAKRKKSDCTHNSE*

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