Glyma06g00360 - SoyBase

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Report for Sequence Feature Glyma06g00360

Feature Type:	gene_model
Chromosome:	Gm06
Start:	126999
stop:	137046
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12230	AT	Annotation by Michelle Graham. TAIR10: MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:3953915-3955285 REVERSE LENGTH=221	SoyBase	E_val: 1.00E-45	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9T2I7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T2I7_RICCO	SoyBase	E_val: 9.00E-61	ISS
UniRef100_I1K6W3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6W3_SOYBN	SoyBase	E_val: 6.00E-151	ISS

Expression Patterns of Glyma06g00360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00360

Paralog	Evidence	Comments
Glyma04g00310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g001300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g00360

Limit To All Plant Sequences

>Glyma06g00360.2   sequence type=transcript   gene model=Glyma06g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTATCATAAATGGGAGAAGATTATTATAAATGGAGAATTTTGTAGCGGATTGGATTGGGGTTTCGCTGTGAAAGAAGGAAAGGAAGGGAACATAGAACTTGTGAACTTGAGACAGCGCACAACACAACAAAACACAATTACAGCAGAAACAAACCTAAATTTCCTTGATAATGATTCAAGAACTCATGATAGATTGACGCATGGATCCTGACAGCAAAAAATTTGGTGGAGATGCACACTATTTATACAATGTAGTAGGTGACATAGAAATCAGAAAAGGAGATGGGATGCAGTTGGATCAACTTATTCAAGATACATCTTTGTCCAGTGGTTCTAATTATCATATACAACCTTTGGACCTCGATATTCTAAAGGAGGCTTTTCAACTCAAGGAAACTGTTCCCATTGATTTGCCTGCTGCCGAGAAGGGGATTCTGACTGTTGCAGGAAAATCAAAAGGTGAATCTAAAGATGTGGAGAAGAAGCATAAAAAACACAAAGACAGGGACAAAGATAAGGACAAGGAGCATAGGAAGCACAAGCATCGTCAAAAAGATCAAACCAAAGACAAAGAAAAGGAGAAAAAGAAAGACAAAAACAGGCATCATGATTCTAGTGCTGATCCTTCAAAGAAACACCATGAGAAGAAAAGGAAGCATGGTGGAGATGATGATCTTAACGGTGTGCACAAACACAAAAAAGTAAGCATTAGAGCTCAAAAATTGATGAATTGGGGGCAATAAAGGTTGCAGGCTAAAATGGTTACATATTGTAGTTCTCTTTTCCTCAAATGGTTGTTCTCATTTGTTAAAGTTTGTGGAGGGGTCTGTCACTTGACATTATCAGATTTCTTGAGGTTCTCATTTCTGATAATTGCATTATGGAATTGGAAACGCGTAAAAGACAATAGAAGACGCAAGTAAATAAATGTTTTGGATTCTGGCAATGGAAAACAATGCTCGCCAATCCTTATATCTTTAGTTTGTTTCATGATAAGCGTTGTTGATAGTTGCAGTATGCATGATGCCTTCTAATTTTTTGCAGAGTAGCTAGTGATCTGACTAAATAGTATCATGAAGGTGAATTCACCTGATGAAGGAAAAGGATCCAAGGTAAAATTTGCTGAAAGTGAACCCTTCTTTTCTTTTTCTTTTGTATAATTAACACTCATTTGATATAATTTCCAGTAATTTGCGAAACTTCGGTCTTTCTTTCCCAGTTTTTTTGGCGCACTGGATAACAAAACATGTGTGCATTTACTTTAATCTTTGTAGATTTTTCGGTCTATATATATTCGTAGTTTAAATTAAAGATAACATCTTATTTAGGATGATTGAATTAAGTATGCAGGTTGTGTACATTGATTACTTTCTCCTATATCTTGTACTAAGTAGCATGCCTCGCCTTAATAGTGTTTGAAGGCTTAGGCACCAAACAAACTCACCATTTGGTTCGAACCAATATATGTTGTATGTTAAGATAAAATGTTCAGAGTTCTTCAATTTTAAATGATTATTTTAAGGTGGC

Coding sequences of Glyma06g00360

Limit To All Plant Sequences

>Glyma06g00360.1   sequence type=CDS   gene model=Glyma06g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTGACAGCAAAAAATTTGGTGGAGGGCCAAGAGAATTGACAGGTGCTGTGGATCTATTAAATCACTTCCAATTACTCCCACATTTTGAGTTTTTCTGCAAGAGGCCACTTCCTGTTTCAATTTCAGATGCACACTATTTATACAATGTAGTAGGTGACATAGAAATCAGAAAAGGAGATGGGATGCAGTTGGATCAACTTATTCAAGATACATCTTTGTCCAGTGGTTCTAATTATCATATACAACCTTTGGACCTCGATATTCTAAAGGAGGCTTTTCAACTCAAGGAAACTGTTCCCATTGATTTGCCTGCTGCCGAGAAGGGGATTCTGACTGTTGCAGGAAAATCAAAAGGTGAATCTAAAGATGTGGAGAAGAAGCATAAAAAACACAAAGACAGGGACAAAGATAAGGACAAGGAGCATAGGAAGCACAAGCATCGTCAAAAAGATCAAACCAAAGACAAAGAAAAGGAGAAAAAGAAAGACAAAAACAGGCATCATGATTCTAGTGCTGATCCTTCAAAGAAACACCATGAGAAGAAAAGGAAGCATGGTGGAGATGATGATCTTAACGGTGTGCACAAACACAAAAAAGTAAGCATTAGAGCTCAAAAATTGATGAATTGGGGGCAATAA

>Glyma06g00360.2   sequence type=CDS   gene model=Glyma06g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTGACAGCAAAAAATTTGGTGGAGATGCACACTATTTATACAATGTAGTAGGTGACATAGAAATCAGAAAAGGAGATGGGATGCAGTTGGATCAACTTATTCAAGATACATCTTTGTCCAGTGGTTCTAATTATCATATACAACCTTTGGACCTCGATATTCTAAAGGAGGCTTTTCAACTCAAGGAAACTGTTCCCATTGATTTGCCTGCTGCCGAGAAGGGGATTCTGACTGTTGCAGGAAAATCAAAAGGTGAATCTAAAGATGTGGAGAAGAAGCATAAAAAACACAAAGACAGGGACAAAGATAAGGACAAGGAGCATAGGAAGCACAAGCATCGTCAAAAAGATCAAACCAAAGACAAAGAAAAGGAGAAAAAGAAAGACAAAAACAGGCATCATGATTCTAGTGCTGATCCTTCAAAGAAACACCATGAGAAGAAAAGGAAGCATGGTGGAGATGATGATCTTAACGGTGTGCACAAACACAAAAAAGTAAGCATTAGAGCTCAAAAATTGATGAATTGGGGGCAATAA

Predicted protein sequences of Glyma06g00360

Limit To All Plant Sequences

>Glyma06g00360.1   sequence type=predicted peptide   gene model=Glyma06g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPDSKKFGGGPRELTGAVDLLNHFQLLPHFEFFCKRPLPVSISDAHYLYNVVGDIEIRKGDGMQLDQLIQDTSLSSGSNYHIQPLDLDILKEAFQLKETVPIDLPAAEKGILTVAGKSKGESKDVEKKHKKHKDRDKDKDKEHRKHKHRQKDQTKDKEKEKKKDKNRHHDSSADPSKKHHEKKRKHGGDDDLNGVHKHKKVSIRAQKLMNWGQ*

>Glyma06g00360.2   sequence type=predicted peptide   gene model=Glyma06g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPDSKKFGGDAHYLYNVVGDIEIRKGDGMQLDQLIQDTSLSSGSNYHIQPLDLDILKEAFQLKETVPIDLPAAEKGILTVAGKSKGESKDVEKKHKKHKDRDKDKDKEHRKHKHRQKDQTKDKEKEKKKDKNRHHDSSADPSKKHHEKKRKHGGDDDLNGVHKHKKVSIRAQKLMNWGQ*

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