Glyma06g00320 - SoyBase

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Report for Sequence Feature Glyma06g00320

Feature Type:	gene_model
Chromosome:	Gm06
Start:	111660
stop:	114207
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35250	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr4:16771401-16773269 REVERSE LENGTH=395	SoyBase	E_val: 0	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG1203	KOG	Predicted dehydrogenase	JGI		ISS
PTHR14194	Panther	NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED	JGI		ISS
PTHR14194:SF21	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05368	PFAM	NmrA-like family	JGI		ISS
UniRef100_O65502	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g35250/F23E12_190 n=1 Tax=Arabidopsis thaliana RepID=O65502_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339470	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339470 related cluster n=1 Tax=unknown RepID=UPI0002339470	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00320

Paralog	Evidence	Comments
Glyma04g00270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g001000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g00320

Limit To All Plant Sequences

>Glyma06g00320.2   sequence type=CDS   gene model=Glyma06g00320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGATGAAGGTGTGGGATGCTGCTCAAGGTACCCACAACCACAACGACATCTGGCACTGCCCAACTGCAATGGCGGTGCAGTGTAAGTGTAGCAACCACCACACTGGCGTTTCCGGCGGAAAGAGGAGAATGGAATTGGAGGGTGAAATGCAGCAGGGGCGGCGAGTTTTGGGCCTGGGAAGGCAGATTGTGCGACGGGCACTTGACGAAGGCTACGACGTTAGGTGTCTGGTCAGGCCCAGGCCCGCTCCTGCCGACTTCCTTCGCGATTGGGGAGCAACAGTTGTGAATTTTCTATTCCACTCATATAAACCAGAAACCATTCCTGCTACCTTGGTCGGCATACACACTGTCATTGACTGCGCCACTGGCCGTCCCGAGGAGCCCATCAAAACCGAAGGTAAAGTGGCTCTTATACAATGTGCCAAGGCAATGGGAATTCAGAAATATGTCTTCTACTCCATCCATAACTGCGACAAACATCCCGAGGTTCCCCTCATGGAGATCAAGTTTTGCATTGAGAAGTTCCTCCGAGACTCTGGCCTCAATCACGTCATTATCCGCTTATGCGGTTTCATGCAGGGCCTTATCGGTCAGTATGCAGTTCCTATCCTAGAAGAAAAATCTGTTTGGGGTACTGATGCCCCCACCAGAATTGCTTACATGGATACTCAGGATATAGCTCGCTTGACATTTATAGCCATACGAAATGATAAATTAAATGGTAAACTTCTTACATTTGCTGGTCCTCGTGCCTGGACAACCCAAGAGGTGATAACCTTGTGCGAGAGGCTAGCAGGCCAAGATGCTAATGTCACTACTGTTCCTTGGACAAATGATGTTGCTGACAGACTCGCATTTTCAGAGGTCCTTACCAGCGATACTGTATTTTCTGTTCCGATGGCAGAGACATACAATCTTCTTGGGGTTGATTCAAAAGACATAGTTACACTAGAGAAGTATTTGCAGGACTACTTCACTAACATATTAAAGAAATTGAAGGATCTCAAGGCTCAGTCAAAGCAAACGGATATTATCTTCTGA

Predicted protein sequences of Glyma06g00320

Limit To All Plant Sequences

>Glyma06g00320.2   sequence type=predicted peptide   gene model=Glyma06g00320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMMKVWDAAQGTHNHNDIWHCPTAMAVQCKCSNHHTGVSGGKRRMELEGEMQQGRRVLGLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNFLFHSYKPETIPATLVGIHTVIDCATGRPEEPIKTEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKFCIEKFLRDSGLNHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIAIRNDKLNGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDSKDIVTLEKYLQDYFTNILKKLKDLKAQSKQTDIIF*

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