Glyma06g00310 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma06g00310): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma06g00310): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma06g00310

Feature Type:	gene_model
Chromosome:	Gm06
Start:	109523
stop:	111629
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16660	AT	Annotation by Michelle Graham. TAIR10: heat shock protein 70 (Hsp 70) family protein \| chr4:9377225-9381232 FORWARD LENGTH=867	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0103	KOG	Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily	JGI		ISS
PTHR19375	Panther	HEAT SHOCK PROTEIN 70KDA	JGI		ISS
PTHR19375:SF8	Panther	HEAT SHOCK PROTEIN 70	JGI		ISS
PF00012	PFAM	Hsp70 protein	JGI		ISS
UniRef100_F4JMJ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock 70 kDa protein 17 n=1 Tax=Arabidopsis thaliana RepID=HSP7R_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233946F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233946F related cluster n=1 Tax=unknown RepID=UPI000233946F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g00310 not represented in the dataset	Glyma06g00310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g00310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g000900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g00310

Limit To All Plant Sequences

>Glyma06g00310.2   sequence type=CDS   gene model=Glyma06g00310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGATTCCAGAGGCGGCGTGAGTTTCGTCGCGGACGCCGTATACTCGCCCGAGGAACTGGTGGCCATGATGTTGGGTCACACGGCGAGTTTGGCGGAGTTTCACGCGAAGGTTCCTATAAAGGACGCAGTGATTGCGGTGCCACCGAATCTGGGGCAAGCCGAGCGGAGAGGATTGCTTGTGGCGGTGCAGTTTGCGGGGATTAACTCGAGGCACGTGATCTTCTATGACATGGGTTCCAGCAGTACCTATGCAGCGGTTGTGTATTTCTCGTCGTGTGGGAAGGTGAACCCGGAGCTTGGGGGTCAGCATATGGAATTGCGATTGGTGGAGTATTTTGCTGATGAGTTCAATGCACAAGTTGGTGGTGGAATAGATGTCAGGCATTTTCCCAAGGCCATGGCTACATTGAAGAAACAGGTTAAACGAAGAAAAGAAATGCTTAGTGCAAACACAGTTGCTCCTATTTCAGTTGAATCGCTTGATGATGGCGTCGACTTCGGGAGCACAATGAACCGTGAGAAATTTGAAGACCTCTGTCAAGACATTTGGGATAAATCTCTTTTGCCTGTGAAAGAGGTGCTTCAGCATTCTGGCCTGTCATTGGACCTAATATATGCACTGCAGTTGATTGGAGGTGCTACCAGAGTGCCAAAATTACAGGCTCAGCTTCAACAATTCCTTGGGAGAAAACAACTTGACAGGCATCTTGATGCTGATGAAGCAATAGTTCTTGGCTCAGCTCCGCACGCTGCAAATTTAAGTGACGGAATCAAATTGAAAAGCAAACTAGGAATACTTGATGCTTCCATGTATGGTTTTGTGGTTGAGTTGAGTGCTCCTGATCTTTCCAAAGATGAAAGCTCTAGGCAGTTACTTGTACCGCAAATGAAGAAAGTCCCCAGTAAAGATCCTGAGCATCATTTGCCTCCTGGTGTTACCTCTCCTGAAATTGCTCAATACCAGATATCTGGTTTGACAGATGCCAGTGAGAAATACTCATCTCGGAATCTTAGGAGTGGGATTCTTTCTCTGGATCGGGCAGATGCCATTATTGAAATAACAGAGAGGGTGGAAGTTCCAAGGAAGAATATGACCATAGAGAATTCAACCATTTCATCAAATGTTTCGGCTGAATCTGCTGGTAGTAATAGTTCTGAGGAAAACATGCAAACTGATAGTGAGATTAGTAAGACATCCAACGGTAGTGCAGAGGAGCAAGCTACTGCTGCTGAGCCCGCTACAGAGGAAAAGCTGAAAAAGCGAACCTTTAGGGTACCATTAAATATTGTTGAGAAGATAACTGGACCTGGAATGCCTCTATCTCAAGATTTTCTTGCTGAAGCCAAAAGAAAATTACTAGCACTAGATGAAAAAGACGCAGACAGAAAAAGAACAACTGATGAGGAACGCCAGTCCTTCATTGAGAAGCTTGATCAGGTTCAAGATTGGTTGTATAGAGATGGTGAAGATGCCAATGCCACAGAGTTTCAAGAGCTTCTAGATCAGTTAAAAACTGTTGGAAATCCGATTTTCTTCAGGTTGAAAGAGCTGACAGCTCGACCAGCAGCAGTTGAGCATGCTCATAGATACATTGATGAGTTGAAAGAGTGGAAAGCAAACAAGAAGCCCGCATTTATCTCTGAAGCAGTATATTCAAAGGTGCTTGATCTGCAAAACAAGGTTTCCAGTATTAATAGAATTCCCAAGCAAAATACATGA

Predicted protein sequences of Glyma06g00310

Limit To All Plant Sequences

>Glyma06g00310.2   sequence type=predicted peptide   gene model=Glyma06g00310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
EDSRGGVSFVADAVYSPEELVAMMLGHTASLAEFHAKVPIKDAVIAVPPNLGQAERRGLLVAVQFAGINSRHVIFYDMGSSSTYAAVVYFSSCGKVNPELGGQHMELRLVEYFADEFNAQVGGGIDVRHFPKAMATLKKQVKRRKEMLSANTVAPISVESLDDGVDFGSTMNREKFEDLCQDIWDKSLLPVKEVLQHSGLSLDLIYALQLIGGATRVPKLQAQLQQFLGRKQLDRHLDADEAIVLGSAPHAANLSDGIKLKSKLGILDASMYGFVVELSAPDLSKDESSRQLLVPQMKKVPSKDPEHHLPPGVTSPEIAQYQISGLTDASEKYSSRNLRSGILSLDRADAIIEITERVEVPRKNMTIENSTISSNVSAESAGSNSSEENMQTDSEISKTSNGSAEEQATAAEPATEEKLKKRTFRVPLNIVEKITGPGMPLSQDFLAEAKRKLLALDEKDADRKRTTDEERQSFIEKLDQVQDWLYRDGEDANATEFQELLDQLKTVGNPIFFRLKELTARPAAVEHAHRYIDELKEWKANKKPAFISEAVYSKVLDLQNKVSSINRIPKQNT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain