Glyma06g00300 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g00300

Feature Type:	gene_model
Chromosome:	Gm06
Start:	101275
stop:	106613
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38360	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF300) \| chr4:17967389-17969798 FORWARD LENGTH=485	SoyBase	E_val: 0	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
KOG2641	KOG	Predicted seven transmembrane receptor - rhodopsin family	JGI		ISS
PTHR23423	Panther	ORGANIC SOLUTE TRANSPORTER-RELATED	JGI		ISS
PTHR23423:SF2	Panther	ORGANIC SOLUTE TRANSPORTER-RELATED	JGI		ISS
PF03619	PFAM	Domain of unknown function	JGI		ISS
UniRef100_G7J9A4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein 184C n=1 Tax=Medicago truncatula RepID=G7J9A4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K6V7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6V7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00300

Paralog	Evidence	Comments
Glyma04g00250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g000800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g00300

Limit To All Plant Sequences

>Glyma06g00300.1   sequence type=CDS   gene model=Glyma06g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCATTCTCATCCAATTGTTGTTTTCCTCGCCTCCTGCATGGGCAACTCTAATCGCAGCTGCATTTCTCCTCCTAACTCTAACCCTCTCCATGTATCTTCTCTTCGAGCATCTTTCCGCTTACAAGAACCCCGAGGAGCAAAAGTTCCTCATTGGGGTTATCCTAATGGTTCCCTGCTATTCTTTTGAATCTTTTGTATCATTGGTCAATCCATCAATCAGTGTTGATTGCGAGATTCTAAGGGACTGCTACGAATCCTTTGCCATGTATTGCTTTGGAAGATACCTTGTTGCCTGCCTCGGTGGTGACGAAAGGACTGTTCAATTTATGGAAAGACAGGCTCGTCTCTCTGTTAAAGCTCCTCTTCTACAACTTTCTTCTTCTGACAAGGCCATTGTCAACCATCCATTTCCTCTCAACTACTTCCTTAAACCCTGGAAACTTGGTCGCGCCTTCTACCAAATTGTAAAATTTGGCATTGTTCAATATATGCTAACCAAGGCTTTCACTGCTATTCTCGCTGTAATCCTTGAAGCTTTTGGAGTCTACTGTGAAGGAGAATTTAAAGCAGGATGTGGGTATCCTTATATGGCAGTGGTTCTGAATTTCAGTCAGTCATGGGCTTTGTACTGCCTAGTTCAATTTTATACAGTTACAAAGGAAGAACTGGCTCATATAAAGCCATTGGCCAAATTTTTGACATTTAAATCAATTGTGTTCCTCACTTGGTGGCAAGGTGTGGCAATTGCTCTCCTATCCACCTTTGGTTTGTTCAAAAGTCCCATTGCTCAAGGCTTGCAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGCATCGAGATGGGCATTGCTTCCATAGTTCACCTGTATGTGTTTCCAGCAAAGCCTTATGAGCGAATGGGAGACCGCTTTTCTGGAAGTGTTTCAGTTCTCGGAGATTACTCAGCTGACTGTCCTCTGGACCCTGATGAGATTAGGGACAGTGAGAGACCCACAAAACTGCGTCTTCCTACGCCGGATGTTGATACCAAGAGTGGGATGACAATTAGAGAGAGTGTTCGTGATGTTGTTATTGGTGGTGGTGGATATATTGTAAAAGATGTGAAGTTCACTGTCCATCAAGCAGTGGAGCCTGTGGAAAAGGGTATCACTAGATTCAACGAAAAACTACACAGAATCTCCGAAAATATGAAGAAGCATGACAAAAATGGAAGAAGAACCAAGGATGATAGTTGCATTGCCTCATCATCACCTGCAAGGAGAGTAATTCGGGGAATCGATGACCCCCTCTTGAATGGGAGTGTCAGCGATAGTGGGATGTTGAGGGTGAAGAAGCACCGCCGGAAATCTGGATATACAAGTGCAGAGAGTGGAGGAGAGAGCAGTAGTGATCAAGGTTTTGGTGGCTACCAGATTAGAGGCCGTAGGTGGGTTACTAAAGAGTAA

Predicted protein sequences of Glyma06g00300

Limit To All Plant Sequences

>Glyma06g00300.1   sequence type=predicted peptide   gene model=Glyma06g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNSSSSSSSSSILIQLLFSSPPAWATLIAAAFLLLTLTLSMYLLFEHLSAYKNPEEQKFLIGVILMVPCYSFESFVSLVNPSISVDCEILRDCYESFAMYCFGRYLVACLGGDERTVQFMERQARLSVKAPLLQLSSSDKAIVNHPFPLNYFLKPWKLGRAFYQIVKFGIVQYMLTKAFTAILAVILEAFGVYCEGEFKAGCGYPYMAVVLNFSQSWALYCLVQFYTVTKEELAHIKPLAKFLTFKSIVFLTWWQGVAIALLSTFGLFKSPIAQGLQFKSSVQDFIICIEMGIASIVHLYVFPAKPYERMGDRFSGSVSVLGDYSADCPLDPDEIRDSERPTKLRLPTPDVDTKSGMTIRESVRDVVIGGGGYIVKDVKFTVHQAVEPVEKGITRFNEKLHRISENMKKHDKNGRRTKDDSCIASSSPARRVIRGIDDPLLNGSVSDSGMLRVKKHRRKSGYTSAESGGESSSDQGFGGYQIRGRRWVTKE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain