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Report for Sequence Feature Glyma06g00275

Feature Type:gene_model
Chromosome:Gm06
Start:92260
stop:96180
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g00275
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20610AT Annotation by Michelle Graham. TAIR10: Cyclin B2;3 | chr1:7135073-7137273 REVERSE LENGTH=429 SoyBaseE_val: 5.00E-157ISS
GO:0000079GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016538GO-mf Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity SoyBaseN/AISS
GO:0019901GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase binding SoyBaseN/AISS
KOG0653 KOG Cyclin B and related kinase-activating proteins JGI ISS
PTHR10177Panther CYCLINS JGI ISS
PTHR10177:SF24Panther G2/MITOTIC-SPECIFIC CYCLIN B JGI ISS
PF00134PFAM Cyclin, N-terminal domain JGI ISS
PF02984PFAM Cyclin, C-terminal domain JGI ISS
UniRef100_B6V744UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cyclin B n=1 Tax=Populus tomentosa RepID=B6V744_POPTO SoyBaseE_val: 1.00E-173ISS
UniRef100_C6T853UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T853_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g00275
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g00275 not represented in the dataset
Glyma06g00275 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00275
ParalogEvidenceComments
Glyma04g00230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00275 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g000600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g00275
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g00275
>Glyma06g00275.1   sequence type=CDS   gene model=Glyma06g00275   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAAGACTGAAAGAAACTTGTACATGCCGCATGGTTGGGTAACGGCTAGTACGAATCACAAGTTGCACCGCGACATCACCGTCTCAAATTCGCTTTTCATCCTTTCTTTTTATGTTCAGTGTTGGCTGTGCTGTCGCCCCCACCTATATTCAGATTCAATTCAATTTTTCTTTCTTCTTCTTCAGATTCGCATGGAGGGCTCAAAGGAAAACCGTGTGCCTCCGCTTCCGCTCATACCCTCTTCGAATCTTCAACAAGGCGGTGGTCCAAGAATGAAGCGCCTACTCCATCACCATCACCGGCTGCCTCTCGGCAACATCAGTCAGAATGTTATGCCTCATTCTCATGTCAACAAACTAGATCTTGCCCGCAAGTTTACGCCACACACAGTTCAGCACCACTTCCCTCAGCCACATCCACAGCCTCAAGAAAATAAGAAACAGAACCTTTTGGCCCCGACCCCGAGTTACCAGTTAGATTGTGATATCGTAGATATTGATGACGACGATGGGGATGGCAGTGATGATGCCGTTCCGGTATTTGTCAAGCACACTGAAGCCATGCTTGACGAAATTGACAAGATAGAGGAAGTTGAAATGGAAGATGTAGAGGAGGAACCTGTTTTGGACATCGATGCCTGTGATAGGAAAGATACACTGGCAGTGGTTGAGTACATAGATGATATATACAGTTTCTACAAGGATATTGAGAATTCGAGCCGTGTCTCTCCAAATTACATGAATAGTCAATTTGACATTAATGAAAGGATGAGGGCTATTCTTATTGACTGGCTTGTTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACGTTGTTCCTTACTGTCAATCTCATAGACAGGTTCTTGGAGCGTCAGGCAGTGATCAGAAAGAAACTTCAGTTAGTTGGTGTAACAGCCATGCTAATAGCTTGTAAGTATGAGGAGGTCTCAGTTCCTACCGTTGAGGATTTTATTCTCATAACAGACAAGGCATATACAAGAAATGAAGTTTTAGATATGGAGAAATTAATGATGAACATCTTGCAATTCAAGTTGTCTGTGCCTACTCCATACATGTTCATGAGAAGATTTCTTAAGGCAGCTCATTCTGATAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGGTCGAGCTTTGCTTGGTAGAATGCAAAATGCTGAAGTTTTCACCATCTTTGCTGGCTGCTGCAGCCATTTACACAGCTCAATGTAGTCTGTACCAGTTTAAGCAATGGACTAAGACTACCGAGTGGTACACTGATTACTCAGAAGAGAAACTTCTTGAATGCTCAAGGCTGATGGTTACTTTCCATCAGAAAGCTGGATCGGGGAAACTCACAGGTGTATATAGAAAGTACAATACATGGAAGTATGGCTGTGCCGCGAAAATAGAACCAGCCCTGTTTCTACTGGATAATTAA
Predicted protein sequences of Glyma06g00275
>Glyma06g00275.1   sequence type=predicted peptide   gene model=Glyma06g00275   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKTERNLYMPHGWVTASTNHKLHRDITVSNSLFILSFYVQCWLCCRPHLYSDSIQFFFLLLQIRMEGSKENRVPPLPLIPSSNLQQGGGPRMKRLLHHHHRLPLGNISQNVMPHSHVNKLDLARKFTPHTVQHHFPQPHPQPQENKKQNLLAPTPSYQLDCDIVDIDDDDGDGSDDAVPVFVKHTEAMLDEIDKIEEVEMEDVEEEPVLDIDACDRKDTLAVVEYIDDIYSFYKDIENSSRVSPNYMNSQFDINERMRAILIDWLVEVHYKFELLEETLFLTVNLIDRFLERQAVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRNEVLDMEKLMMNILQFKLSVPTPYMFMRRFLKAAHSDKKLELLSFFLVELCLVECKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTTEWYTDYSEEKLLECSRLMVTFHQKAGSGKLTGVYRKYNTWKYGCAAKIEPALFLLDN*






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