Glyma06g00240 - SoyBase

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Report for Sequence Feature Glyma06g00240

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46396
stop:	49825
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g00240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35270	AT	Annotation by Michelle Graham. TAIR10: Plant regulator RWP-RK family protein \| chr4:16777657-16780824 REVERSE LENGTH=963	SoyBase	E_val: 2.00E-134	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02042	PFAM	RWP-RK domain	JGI		ISS
UniRef100_Q9S7B1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodule inception protein n=1 Tax=Lotus japonicus RepID=Q9S7B1_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233946E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233946E related cluster n=1 Tax=unknown RepID=UPI000233946E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g00240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g00240

Paralog	Evidence	Comments
Glyma04g00210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g00240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g000400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g00240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g00240

Limit To All Plant Sequences

>Glyma06g00240.2   sequence type=CDS   gene model=Glyma06g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATATGGTGGGTTGGTGCAGAATGCATATGGTTCATATGGGAGCTTCTCAGATATTCTTGGCCCAGAAACGGATTTCATCGATGAGCTGTTTGTAGAAGGATGCTGGCTGGAAACAAGGGTTGGATCGTACCTGAATTGTGGCACGGAGGCTAATTCTTCAAAGTCAAACACGATGAGGAGCATGGAGTCGACGCAAATAATATTCCAACAAGAAGAATCATTACCAGACCCGGAAATTAGTTTGATGGTGGGGAAGAGATGGTGGATTGGGCCAAGGGAAAATCCGGGTCCATCTTCCTCTGTGAAAGAGAGATTAGTGATTGCTGTTGGGTACTTGAAAGAATACGCCAAGAATTCCAATTTGCCGATTCAGGTGTGGGTGCCCGAACGTAGATCTGCACGTGCTCAGCCTCAGGATAATATTTACCCATACGCCGCCGCGCTTCTTAATGGGGATGCAGCAGCTTTTCAGATTCAAGAGGATTGGGTTCATGTTAATGATCAGTACTGGACTCCCAACGTCCGCTTCTTCAGAAGTCACGAGTACCCGCGCCATCTCCGTACTCCTGGATCTCTCGCACTTCCTGTCTTTGAGAGAGGCACTGCTATGTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACCCTCCCGACCTTCAGTGTACTGTTGATTTTACGAGCAGTACTTCTTCTCATCATCACAACTTCATTCCACCAGCCGTGACCGTCAAGGGCTTTGACGAGCTGTACCAAAGTGCATTAAATGGGATAGTACAAGTTTTGACGTGTGTATGCAAGGCGCATAACTTGCCTTTAGCTCTGACATGGGCTCCCTGCATCCAACAAGCAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGATGAATTATGTGTCGACTGTGTATGCTGCTAGTTTTGTGGCGGATGTAGAGCTAATGGGTTTCCTGGAAGCCTGCTCTGAGTGCCACCTTTTGGGGGGGCAAGGAGTAGTTGGGACAGCTTTCACAACCACCAAACCTTGTTTTGCAAATGACATTACTTCCTTCAGCAAGGCGGAGTATCCTCTGGCACATCATGCTAACATGTTTGGCTTGCATGCTGCTCTGGGCATTCCACTCCGGAGTGCCTCCGCTGATTTTGTTTTAGAATTTTTCCTGCCAAAGGATTGCCATGACACCCAAGACCAGAAGCAGTTGCTCAACTCCTTGTTTATGCTAGTGCAACAAGCTTGCCGGAGTTTGCATCTTGTCATGGAGGAGGAGGAGGAACTAATCGCGTTGCCGTCCGTCGTTGGCAAAGAAATGGAATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTGTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAACTGCAGCAATACTAATGAGCAGGTCAGTGTTGGTGTTGAGAGTACTGCAGCTTTTTGTGGCCGCCGGGTTGGCCGGAAATCAGCTGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCAGTTCTTCGACAATACTTTGCAGGAAGCCTGAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACTCTAAAAAGGATATGCAGACAACATGGGATCACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTCAAGGAGCTACTACATTCAAATCCCCAACAACTTCGCCTTGCAGTCAGACCACTATTGTGA

Predicted protein sequences of Glyma06g00240

Limit To All Plant Sequences

>Glyma06g00240.2   sequence type=predicted peptide   gene model=Glyma06g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYGGLVQNAYGSYGSFSDILGPETDFIDELFVEGCWLETRVGSYLNCGTEANSSKSNTMRSMESTQIIFQQEESLPDPEISLMVGKRWWIGPRENPGPSSSVKERLVIAVGYLKEYAKNSNLPIQVWVPERRSARAQPQDNIYPYAAALLNGDAAAFQIQEDWVHVNDQYWTPNVRFFRSHEYPRHLRTPGSLALPVFERGTAMCLGVVEILMPNNPPDLQCTVDFTSSTSSHHHNFIPPAVTVKGFDELYQSALNGIVQVLTCVCKAHNLPLALTWAPCIQQAGKSGCGHSNDEMNYVSTVYAASFVADVELMGFLEACSECHLLGGQGVVGTAFTTTKPCFANDITSFSKAEYPLAHHANMFGLHAALGIPLRSASADFVLEFFLPKDCHDTQDQKQLLNSLFMLVQQACRSLHLVMEEEEELIALPSVVGKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCSNTNEQVSVGVESTAAFCGRRVGRKSAGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVKELLHSNPQQLRLAVRPLL*

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