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Report for Sequence Feature Glyma06G18150

Feature Type:gene_model
Chromosome:Gm06
Start:14483694
stop:14489073
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06G18150
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G50320AT Annotation by Michelle Graham. TAIR10: radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein | chr5:20481200-20484811 REVERSE LENGTH=565 SoyBaseE_val: 0ISS
GO:0002098GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA wobble uridine modification SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009294GO-bp Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation SoyBaseN/AISS
GO:0010084GO-bp Annotation by Michelle Graham. GO Biological Process: specification of organ axis polarity SoyBaseN/AISS
GO:0010928GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of auxin mediated signaling pathway SoyBaseN/AISS
GO:0035265GO-bp Annotation by Michelle Graham. GO Biological Process: organ growth SoyBaseN/AISS
GO:0051604GO-bp Annotation by Michelle Graham. GO Biological Process: protein maturation SoyBaseN/AISS
GO:2000025GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of leaf formation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005719GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear euchromatin SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0033588GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Elongator holoenzyme complex SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004402GO-mf Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity SoyBaseN/AISS
GO:0008080GO-mf Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity SoyBaseN/AISS
GO:0051536GO-mf Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding SoyBaseN/AISS
KOG2535 KOG RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase JGI ISS
PTHR11135Panther HISTONE ACETYLTRANSFERASE-RELATED JGI ISS
PF00583PFAM Acetyltransferase (GNAT) family JGI ISS
PF04055PFAM Radical SAM superfamily JGI ISS
UniRef100_B9IF53UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase n=1 Tax=Populus trichocarpa RepID=B9IF53_POPTR SoyBaseE_val: 0ISS
UniRef100_I1KC74UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC74_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma06G18150
LocusGene SymbolProtein Name
ELO Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex

Expression Patterns of Glyma06G18150
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06G18150 not represented in the dataset
Glyma06G18150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06G18150
ParalogEvidenceComments
Glyma04g36790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06G18150 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g173000 Wm82.a2.v1IGC As supplied by JGI
Glyma06g18150 Wm82.a1.v1.1IGC Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

References for Glyma06G18150
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06G18150
>Glyma06g18150.1   sequence type=CDS   gene model=Glyma06g18150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGGTAGCGGTGGCAGAGGTTGGGAAGGCCCCACGGCCGGGCCAGGGCGGTTACGAAGCGCACGGCCTGAGCGAGGAGGAGGCTCGTGTACGCGCCATCGCGGAGATCGTGAGTTCCATGGTGGACCTCTCCCACAAAGGCCAGAACGTGGACCTGAACGCGCTCAAGTCCGCGGCGTGCCGCAAGTACCGGCTCTCACGCGCGCCGAAGCTCGTGGAGATGATCGCGGCGCTCCCCGACGCCGAGCGCGAGACGCTCCTCCCCAAGCTCCGCGCCAAGCCCGTCCGCACCGCCTCCGGAATCGCCGTCGTCGCCGTCATGTCGAAGCCGCACCGGTGCCCACACATCGCCACCACCGGGAACATCTGCGTCTACTGCCCCGGGGGACCTGACTCCGACTTCGAGTACAGTACCCAGTCTTACACCGGTTATGAACCAACCAGCATGCGTGCAGTTCGTGCGAGGTATAATCCATATGTCCAAGCGAGGTGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGTGTAGACAAGGTTGAATTTATCTTAATGGGCGGTACCTTCATGTCACTTCCGGCTGATTACCGTGATTACTTTATAAGAAATCTTCATGATGCTTTGTCTGGACACACATCTGCCAATGTGGAAGAGGCAGTGGCTTACTCTGAGCATGGGGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAAGATGTTGCTCGAGACACAAATAGAGGACACACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCATATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAACTATCCACCAGAGCAACTTGTGGACATTATAGCAAGGATCCTTGCAATGGTACCCCCATGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACCTCTGGGGTTGAGAAAGGAAATCTGCGGGAGCTGGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCACCACCAAATTAAGCCAGAAGAGGTGGAGCTTGTTCGGCGTGATTATATGGCAAATCAGGGTTGGGAAACATTTCTATCATATGAAGATACACGGCAGGATATCCTTGTTGGTTTGTTGCGGCTGCGAAAATGTGGCCGCAACACAACTTGTCCAGAGCTTATGGGGAAGTGTTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCTGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTATGGCACACTTTTAATGGAGGAGGCAGAGCGCATTGCTTGCAGAGAACACAGATCAACAAAAATAGCTGTAATTTCAGGGGTTGGCACACGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTGAAATATCTAGTGAAATAA
Predicted protein sequences of Glyma06G18150
>Glyma06g18150.1   sequence type=predicted peptide   gene model=Glyma06g18150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVAVAEVGKAPRPGQGGYEAHGLSEEEARVRAIAEIVSSMVDLSHKGQNVDLNALKSAACRKYRLSRAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAVRARYNPYVQARCRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANQGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLVK*






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