SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13300 | AT | Annotation by Michelle Graham. TAIR10: ARF GTPase-activating protein | chr5:4255923-4262018 REVERSE LENGTH=827 | SoyBase | E_val: 0 | ISS |
| GO:0003002 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regionalization | SoyBase | N/A | ISS |
| GO:0006897 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endocytosis | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0033043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
| GO:0048589 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental growth | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0030140 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network transport vesicle | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005543 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0035091 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding | SoyBase | N/A | ISS |
| KOG0521 | KOG | Putative GTPase activating proteins (GAPs) | JGI | ISS | |
| PTHR23180 | Panther | CENTAURIN/ARF | JGI | ISS | |
| PTHR23180:SF22 | Panther | GCN4-COMPLEMENTING PROTEIN | JGI | ISS | |
| PF00023 | PFAM | Ankyrin repeat | JGI | ISS | |
| PF00169 | PFAM | PH domain | JGI | ISS | |
| PF01412 | PFAM | Putative GTPase activating protein for Arf | JGI | ISS | |
| PF03114 | PFAM | BAR domain | JGI | ISS | |
| UniRef100_G7LIT7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein n=1 Tax=Medicago truncatula RepID=G7LIT7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023399C7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023399C7 related cluster n=1 Tax=unknown RepID=UPI00023399C7 | SoyBase | E_val: 0 | ISS |
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Glyma05g38550 not represented in the dataset |
Glyma05g38550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g200700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g38550.1 sequence type=CDS gene model=Glyma05g38550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTTTCACGAATCTCGATGACACTCCAATGTTCCGCCAACAGCTCCTGTGTTTGGAGGAAAATACTGAATCCTTGCGCGCGAGATGCTGCAAGTTCTACAAAGGATGTCGAAAGTATATGGAAGGTCTTCGAGAGTCATATAATGGGGACATTGCATTTGCAAGTGCCATAGAAAATTTTGGAGGAGGGCACAATGATCCTCATTTTGTTTCTTTGGGAGGACCTGTTATGGCCAAATTTACTATAGCGTTGAGAGAAATCAGTACTTACAAGGAACGGCTCCGGTTTCAAGTAGAGCACATTTTCAATGACCAGTTACTACCCATTGTCGATGTTGACATCCATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAAAAAAAGCACTAAGATTGACATTGCCACTGTCATAGAAGAGGAGTTGCAGGATGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATCTGGTTGGCACTCTTAATAACATTGAGTTCAAGAAGAGATTTGAGGTTTTAAAGGCTGTAACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGGTATCAGCTATTACATCAGTTGGAACCTTTAATTAGTGAGATTATGGATTATGTAAAACAGTCAAAAGAAAGTTACAATCAGGAGCAGATTTCACTTTATGAAAGAATGCAAGACTACAAAAAACAAGTTTATGAAGAAAGTAGGTTGTCCTTGAATGGTCCTTATGGTTCTCCTAGTAGAGACTCTGCACCTCCGTTTTCTAGGATATCAAATGAAGTGGCAGATGTAGTGATGGAATCCGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCTAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTGTTGACAGTCGAGGAATGTTGTACTACTATCGCAATCCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGTGGCACTGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTAGCACGTCATACAGTAAGCCTGCTGACATCAACAATCAAGGTTGATGCTGACCAGTCGGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCGAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGCCTCTCTCAGCTGACTCAGAAAACGGCGACTCTTACTCTGATGACAATATTGATAAGTTAGAAAGCTCTCCAGATGATGATCACACTGTGACTGTGAAGTCTGCATCCAAGAATCCCACCCCTAAAAACCAGTTTCGTTCATCTAGAAGTTTGCAGTTGCATAAACACAGTATGAGAATTGAAAAACCAATTGATGTTCTTAGGAGGGTGAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTTAAAGTGTGGGATCCCTCTGTTTTAAGTATGCTTAAGTCACTGGGCAATCTTTTTGCAAACTCAGTTTGGGAGGAGCTGCTGTATCCACCGAGTAATTTGCAAACTGTTGACACCCCTGCGAGTTCATCCAAGGAAAATGGAGAGGAGTTCTTTCATGCAAGAAAACCAAAACATGACGATTCTATTTCATTAAAGGAAAGGTTCATTCATGCAAAGTATTCTGAGAAAATATTTATTCCCCGGACAAAGAAATATCACCCTCTCTTTTCACCCGCACAACTGGTGCTGGAAAGCATCTATGCCAATGATAAGAAAGCAGTCTACCAGCATATTATCAAGTCAGATTTTGACATCAATGCCATCGGTTGGCAAGCATCGTCTGATGACTCTTTCAACATGGTTTCTTCAAATAATTTAAACATTGCCTCTCAAAGTGAAATTCAGCCCATTGAGGCCATACAAGATGGTTCTAGCGTGCTTCACCTTGCATGCCTAACTAGTGACATTGGCATGGTGGAGCTGCTCCTACAACATGGGGCAAATATAAATGCTTGTGATTCTAGAGGTCAGACACCACTACATTATTGTATTATTAAAGGGAAGACCGCAGCTGCAAAAGTGCTTATCATGAGGGGAGCCAATACATATGTCGCAGATAAAGAAGGCAAAACTCCTGTTAAGCTTGCATCAGAATCTGGCTGTGGTGATGATGAAATTCTCGCTCTCTTGACAAGCAGATGA
>Glyma05g38550.1 sequence type=predicted peptide gene model=Glyma05g38550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRFTNLDDTPMFRQQLLCLEENTESLRARCCKFYKGCRKYMEGLRESYNGDIAFASAIENFGGGHNDPHFVSLGGPVMAKFTIALREISTYKERLRFQVEHIFNDQLLPIVDVDIHEVKEARKRFDKASLVYDQAREKFMSLKKSTKIDIATVIEEELQDARASFEEARFNLVGTLNNIEFKKRFEVLKAVTGIMDAHLRYFQQGYQLLHQLEPLISEIMDYVKQSKESYNQEQISLYERMQDYKKQVYEESRLSLNGPYGSPSRDSAPPFSRISNEVADVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVVDSRGMLYYYRNPYGSNQPSPKRNSGTENGSGLLSRWLSSHYHGGVHDERSVARHTVSLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGMPLSADSENGDSYSDDNIDKLESSPDDDHTVTVKSASKNPTPKNQFRSSRSLQLHKHSMRIEKPIDVLRRVSGNDKCADCGKPEPEWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLSMLKSLGNLFANSVWEELLYPPSNLQTVDTPASSSKENGEEFFHARKPKHDDSISLKERFIHAKYSEKIFIPRTKKYHPLFSPAQLVLESIYANDKKAVYQHIIKSDFDINAIGWQASSDDSFNMVSSNNLNIASQSEIQPIEAIQDGSSVLHLACLTSDIGMVELLLQHGANINACDSRGQTPLHYCIIKGKTAAAKVLIMRGANTYVADKEGKTPVKLASESGCGDDEILALLTSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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