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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26470 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9155134-9156036 FORWARD LENGTH=133 | SoyBase | E_val: 1.00E-47 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR13581 | Panther | MRG-BINDING PROTEIN | JGI | ISS | |
| PF07904 | PFAM | CT20 family | JGI | ISS | |
| UniRef100_I1K6S7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6S7_SOYBN | SoyBase | E_val: 1.00E-86 | ISS |
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Glyma05g38520 not represented in the dataset |
Glyma05g38520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g01130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g201000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g38520.3 sequence type=transcript gene model=Glyma05g38520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTATAAAATTGGGCCTAATTGATTTAAATAATCGACCCAAATTGAAAGAAACGTCTTTTGCAGTTGACACTATAAAGAGCTTCCGCTTCTTCTTCAGGGTTTATGCTTTCTACATTTTGTTCCCTATTCGTGTGCGTACGTTGTTCGTGATCAGTATATAAAGACAAATGAGCAGTGGTGGAAGGGCTGTGAAGCCCAAAGAGGAGGAGCAAGATGGCATGTCTGTCCACTCTCCTTGCAAACCTCCTCCTTCCTCTGCTTCCTCTCTCCCCAAGGAGCAGTCACAGGTTGAATTGGAGCTGAGATTGTTGGAAGCTCTTGAGATTTACCCTCCAATGAAACTACAAGGAGTACATCGTCACTTTGTCCTTTATGGTCTGATGGAATTTCTAAGGAGGAAGTTTGACAGACAATTTTCTTCTGAGGAGGTCCTACAATTGCTGGATCGGTTCTACAACTTAGAAATGCTGAAAACAGATGATGACGAGATTGATTTGCTTACTCACGAAGAAGAATTTTCCTTGCCTCAGAGTTACTTTGTCAAGGAAGAACCCTGAGCAACAATTTTTGGAGTATATACATTTTTTGTTTCAATCGTTATTCATCTTTTGATGTGTACAGCTGGTTATTCTATTATTCCTTTCCCCTCTTCCCTCTTTTGGGATTATATGTTCATGGTAGAACCCGTCAAGTGTTGCTGGTGTTCTCATCGCTTGTCTGTCAAGTTTCACCGGTGGTTCCGGTTGGTACTCTCAATCATAATGTATTTAGCTACACTGGTTCGGATATAATGCATTTTGACTTAAAGGATATTATTAGATCGATCGTAAACACATCGTGCAATCGTAATCTG >Glyma05g38520.4 sequence type=transcript gene model=Glyma05g38520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTATAAAATTGGGCCTAATTGATTTAAATAATCGACCCAAATTGAAAGAAACGTCTTTTGCAGTTGACACTATAAAGAGCTTCCGCTTCTTCTTCAGGGTTTATGCTTTCTACATTTTGTTCCCTATTCGTGTGCGTACGTTGTTCGTTTCAATCTGAGATATTCCTATCATCATGCAATCTGAGATATTTACTGCAGTGATCAGTATATAAAGACAAATGAGCAGTGGTGGAAGGGCTGTGAAGCCCAAAGAGGAGGAGCAAGATGGCATGTCTGTCCACTCTCCTTGCAAACCTCCTCCTTCCTCTGCTTCCTCTCTCCCCAAGGAGCAGTCACAGGTTGAATTGGAGCTGAGATTGTTGGAAGCTCTTGAGATTTACCCTCCAATGAAACTACAAGGAGTACATCGTCACTTTGTCCTTTATGGTCTGATGGAATTTCTAAGGAGGAAGTTTGACAGACAATTTTCTTCTGAGGAGGTCCTACAATTGCTGGATCGGTTCTACAACTTAGAAATGCTGAAAACAGATGATGACGAGATTGATTTGCTTACTCACGAAGAAGAATTTTCCTTGCCTCAGAGTTACTTTGTCAAGGAAGAACCCTGAGCAACAATTTTTGGAGTATATACATTTTTTGTTTCAATCGTTATTCATCTTTTGATGTGTACAGCTGGTTATTCTATTATTCCTTTCCCCTCTTCCCTCTTTTGGGATTATATGTTCATGGTAGAACCCGTCAAGTGTTGCTGGTGTTCTCATCGCTTGTCTGTCAAGTTTCACCGGTGGTTCCGGTTGGTACTCTCAATCATAATGTATTTAGCTACACTGGTTCGGATATAATGCATTTTGACTTAAAGGATATTATTAGATCGATCGTAAACACATCGTGCAATCGTAATCTG
>Glyma05g38520.2 sequence type=CDS gene model=Glyma05g38520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAGTGGTGGAAGGGCTGTGAAGCCCAAAGAGGAGGAGCAAGATGGCATGTCTGTCCACTCTCCTTGCAAACCTCCTCCTTCCTCTGCTTCCTCTCTCCCCAAGTCACAGGTTGAATTGGAGCTGAGATTGTTGGAAGCTCTTGAGATTTACCCTCCAATGAAACTACAAGGAGTACATCGTCACTTTGTCCTTTATGGTCTGATGGAATTTCTAAGGAGGAAGTTTGACAGACAATTTTCTTCTGAGGAGGTCCTACAATTGCTGGATCGGTTCTACAACTTAGAAATGCTGAAAACAGATGATGACGAGATTGATTTGCTTACTCACGAAGAAGAATTTTCCTTGCCTCAGAGTTACTTTGTCAAGGAAGAACCCTGA >Glyma05g38520.3 sequence type=CDS gene model=Glyma05g38520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAGTGGTGGAAGGGCTGTGAAGCCCAAAGAGGAGGAGCAAGATGGCATGTCTGTCCACTCTCCTTGCAAACCTCCTCCTTCCTCTGCTTCCTCTCTCCCCAAGGAGCAGTCACAGGTTGAATTGGAGCTGAGATTGTTGGAAGCTCTTGAGATTTACCCTCCAATGAAACTACAAGGAGTACATCGTCACTTTGTCCTTTATGGTCTGATGGAATTTCTAAGGAGGAAGTTTGACAGACAATTTTCTTCTGAGGAGGTCCTACAATTGCTGGATCGGTTCTACAACTTAGAAATGCTGAAAACAGATGATGACGAGATTGATTTGCTTACTCACGAAGAAGAATTTTCCTTGCCTCAGAGTTACTTTGTCAAGGAAGAACCCTGA >Glyma05g38520.4 sequence type=CDS gene model=Glyma05g38520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAGTGGTGGAAGGGCTGTGAAGCCCAAAGAGGAGGAGCAAGATGGCATGTCTGTCCACTCTCCTTGCAAACCTCCTCCTTCCTCTGCTTCCTCTCTCCCCAAGGAGCAGTCACAGGTTGAATTGGAGCTGAGATTGTTGGAAGCTCTTGAGATTTACCCTCCAATGAAACTACAAGGAGTACATCGTCACTTTGTCCTTTATGGTCTGATGGAATTTCTAAGGAGGAAGTTTGACAGACAATTTTCTTCTGAGGAGGTCCTACAATTGCTGGATCGGTTCTACAACTTAGAAATGCTGAAAACAGATGATGACGAGATTGATTTGCTTACTCACGAAGAAGAATTTTCCTTGCCTCAGAGTTACTTTGTCAAGGAAGAACCCTGA
>Glyma05g38520.2 sequence type=predicted peptide gene model=Glyma05g38520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSGGRAVKPKEEEQDGMSVHSPCKPPPSSASSLPKSQVELELRLLEALEIYPPMKLQGVHRHFVLYGLMEFLRRKFDRQFSSEEVLQLLDRFYNLEMLKTDDDEIDLLTHEEEFSLPQSYFVKEEP* >Glyma05g38520.3 sequence type=predicted peptide gene model=Glyma05g38520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSGGRAVKPKEEEQDGMSVHSPCKPPPSSASSLPKEQSQVELELRLLEALEIYPPMKLQGVHRHFVLYGLMEFLRRKFDRQFSSEEVLQLLDRFYNLEMLKTDDDEIDLLTHEEEFSLPQSYFVKEEP* >Glyma05g38520.4 sequence type=predicted peptide gene model=Glyma05g38520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSGGRAVKPKEEEQDGMSVHSPCKPPPSSASSLPKEQSQVELELRLLEALEIYPPMKLQGVHRHFVLYGLMEFLRRKFDRQFSSEEVLQLLDRFYNLEMLKTDDDEIDLLTHEEEFSLPQSYFVKEEP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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