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Report for Sequence Feature Glyma05g38370

Feature Type:gene_model
Chromosome:Gm05
Start:41747454
stop:41748660
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g38370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G50810AT Annotation by Michelle Graham. TAIR10: translocase inner membrane subunit 8 | chr5:20675875-20676505 REVERSE LENGTH=77 SoyBaseE_val: 2.00E-22ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0045039GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into mitochondrial inner membrane SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005743GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane SoyBaseN/AISS
GO:0005758GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial intermembrane space SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0042719GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial intermembrane space protein transporter complex SoyBaseN/AISS
GO:0015450GO-mf Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity SoyBaseN/AISS
KOG3489 KOG Mitochondrial import inner membrane translocase, subunit TIM8 JGI ISS
PTHR21535Panther MAGNESIUM AND COBALT TRANSPORT PROTEIN AND TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 8 JGI ISS
PTHR21535:SF2Panther TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 8 JGI ISS
PF02953PFAM Tim10/DDP family zinc finger JGI ISS
UniRef100_G7J3B9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit Tim8 n=1 Tax=Medicago truncatula RepID=G7J3B9_MEDTR SoyBaseE_val: 1.00E-31ISS
UniRef100_I1K6Q8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K6Q8_SOYBN SoyBaseE_val: 4.00E-38ISS

Expression Patterns of Glyma05g38370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g38370 not represented in the dataset
Glyma05g38370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g38370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g202400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g38370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g38370
>Glyma05g38370.2   sequence type=CDS   gene model=Glyma05g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTTTCGCAACATAACTCATCTGAAATGGATCAATTCTACACTCAAGAACGGCAAATAGCCATGGCTAATGAAATGGTGGCAAAGCTGACAAGTACAAGCTGGGACAAATGCCTCACTGGTACACCTGGGGGTAAATTCAGTTCTAGTGAATCTACTTGTCTTTCAAACTGTGCTCATCTTTATATTGAGATGAGCGTCCTTGTCATGAAAAGGTTTCAGAGTATGCGATGA
Predicted protein sequences of Glyma05g38370
>Glyma05g38370.2   sequence type=predicted peptide   gene model=Glyma05g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFSQHNSSEMDQFYTQERQIAMANEMVAKLTSTSWDKCLTGTPGGKFSSSESTCLSNCAHLYIEMSVLVMKRFQSMR*






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