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Report for Sequence Feature Glyma05g38351

Feature Type:gene_model
Chromosome:Gm05
Start:41724813
stop:41727180
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g38351
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23660AT Annotation by Michelle Graham. TAIR10: homolog of Medicago truncatula MTN3 | chr5:7971936-7973796 REVERSE LENGTH=285 SoyBaseE_val: 1.00E-53ISS
GO:0015770GO-bp Annotation by Michelle Graham. GO Biological Process: sucrose transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005887GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008515GO-mf Annotation by Michelle Graham. GO Molecular Function: sucrose transmembrane transporter activity SoyBaseN/AISS
GO:0051119GO-mf Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity SoyBaseN/AISS
KOG1623 KOG Multitransmembrane protein JGI ISS
PTHR10791Panther STROMAL CELL PROTEIN/NODULIN MTN3-RELATED JGI ISS
PF03083PFAM MtN3/saliva family JGI ISS
UniRef100_G7J3C8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G7J3C8_MEDTR SoyBaseE_val: 2.00E-83ISS
UniRef100_UPI00023399C0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023399C0 related cluster n=1 Tax=unknown RepID=UPI00023399C0 SoyBaseE_val: 2.00E-171ISS

Expression Patterns of Glyma05g38351
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g38351 not represented in the dataset
Glyma05g38351 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g38351
ParalogEvidenceComments
Glyma08g01300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g38351 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g202600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g38351
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g38351
>Glyma05g38351.1   sequence type=CDS   gene model=Glyma05g38351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTGGATTTTTTATGCGTACATAAAGACGGGCGAAATACTTCTTATCACCATTAACGCATTCGGTTGTTTCATAGAGACAGTTTACCTTGTCATTTATATCATTTATTGCCCCAAGAAAGCTAGGTTCTTTACCTTCAAGATGATTTTCTTGTTCAACGTTGGGGTGATTTTCTTGGTGGTTCTTCTTACCCACGTTCTAGCAAAAGAACGAACAGCCCGTATCGAGCTTCTTGGATGGATTTGTGTTGTCCTTTCGACCAGTGTGTTTGCAGCACCTTTAAGCATTATCAAAGTGGTTATTCGTACCAAAAGTGTAGAGTTCATGCCTATTACTCTGTCACTCCTCCTCACAGTAAGTGCAACGATGTGGATGGCATACGGTATTCTCCTCAGGGACATCTATGTTACACTTCCGAACTTTGTGGGTATCACATTTGGAACGATTCAGATAGTGCTCTACTTAATATATAGAAAGAGCAAGCCCGTTAAGGATCAAAAGCTGCCAGAACACAAAAACCATGTTGTTAACGATGAAAACGCCAGCACAGCTGTGAGTGGTGAGAATCAGGGACCAAACACTACTGGATTCGTTGATATTGAGATTGGAGAGAAGAAGCAAGTTCAGGAACAAGCAGAGAAAAAACAGGACCAGCAGTTTGTTAATGCTCGTGACCAAACAGAACACAACAAAACAAGGGAAAGTTGA
Predicted protein sequences of Glyma05g38351
>Glyma05g38351.1   sequence type=predicted peptide   gene model=Glyma05g38351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLWIFYAYIKTGEILLITINAFGCFIETVYLVIYIIYCPKKARFFTFKMIFLFNVGVIFLVVLLTHVLAKERTARIELLGWICVVLSTSVFAAPLSIIKVVIRTKSVEFMPITLSLLLTVSATMWMAYGILLRDIYVTLPNFVGITFGTIQIVLYLIYRKSKPVKDQKLPEHKNHVVNDENASTAVSGENQGPNTTGFVDIEIGEKKQVQEQAEKKQDQQFVNARDQTEHNKTRES*






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