SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48710 | AT | Annotation by Michelle Graham. TAIR10: DEK domain-containing chromatin associated protein | chr3:18041024-18043995 FORWARD LENGTH=462 | SoyBase | E_val: 2.00E-110 | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| KOG2266 | KOG | Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain | JGI | ISS | |
| PTHR13468 | Panther | DEK PROTEIN | JGI | ISS | |
| PF08766 | PFAM | DEK C terminal domain | JGI | ISS | |
| UniRef100_G7J3D6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein DEK n=1 Tax=Medicago truncatula RepID=G7J3D6_MEDTR | SoyBase | E_val: 5.00E-165 | ISS |
| UniRef100_UPI00023399BE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023399BE related cluster n=1 Tax=unknown RepID=UPI00023399BE | SoyBase | E_val: 0 | ISS |
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Glyma05g38280 not represented in the dataset |
Glyma05g38280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g01370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g203100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g38280.1 sequence type=CDS gene model=Glyma05g38280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGCAAGATGGTTTTTGATCAACTAATAAGAGATGGTTTTACTCTCTTCGCAATTCATTCTCTACATTCCCCCCCCCTCTCTCAAGTCTCAACCATGTCTTCCGGAACCCTAGAAAACGAGAAACCTCAAGTGGAAGAAGAACAAGCCCAAGCTGAAGACAACCACACCAAGCAAGAAGATAATTCGGAGATGAAAGACGACGATGACAGAGGCGAAGAGGAAAGGGATCAGGTAGAACAAGAGAAGGATGTGGAGAAAGAGGAAGAAAAAGAAGAAGAAGAAGAAGAGAAGGAGGAGGACCGTGACGAGGTGAAGTCAAAAAAGTCAACGAAAGAAAGCGGTTACGCTACTCCAGGAAGTGAGAGACCAACTAGGGAGAGGAAAACGGTGGAGAGGTACACTGTTTCTTCGCCCGACAAGTTTCCCAGATCTTCTTCCATCAAAGCTCTGTCAATTGAAAAGGGCAACGGTACGCAGCTCAAGGACATTCCTAATGTGGCTTTCACGTTATCAAAGAGAAAAGCTGATGACAACCTGCATGCACTTCATAGTATATTGTTTGGGAAAAAAGCAAAGGTACATCATCTAAAGAGAAATATAGGTCTGTTTTCTGGCTATGTGTGGACTGAGAATGAGGAAAAACAGAGGGTGAAGATAAAGGAGAAGATTGACAAATGTGTGAAAGAAAAGTTGGTGGACTTCTGTAATGTGCTTAATATTCCGATAAATAAGACCAGTAAGAAGAAGGAGGAACTGTCTGCAAAGTTGTTGCAATTTTTGGAGTCCCCACATGCTACAACTGATGTTCTGCTTGCTGATAAGGAAAAGAAAGGCAAAAAGCGAGCCAGAAAGCAAACCCCAAGCAAATCTTCTGGGGAAGGATCCAAAACATCTGCCAAGAAGCAAAAGCAAAATTCACAAGTTGGGAAAAACCAAAAGCAGTCTTCTGACATTGAGGACAGTGATGCAGCTGAACCTTCAGATGCAAAAGTTGATTCTCAGGAAGATGATGATTCAAGTCAAAAAAGTGAAAGTGATAATGAGGAAAGCATATCAGAGAAAGAGGAAGATAAAGAAAAGGCTCACAAACGTACTTCAAAAAAGATTCTGAAGGAGGATCAAACCACACCTGTAAAGAAGACCACTGTTGTAAAGACTGCCAAGAGCAATGAAAAAGCTCCTGAAAAATCTTCTTCAAAAAGGGCTGTTACTGACAGTACTTCTAAGTCCAAGCAATCTGCTTCCAAGAAACAGAAAACAATGAAGGAAAACCAGAACTCTATAGGGAAGGATGCAAACCAAAAACAAGCTGACAAGTCTTCGAAGGCTTTAGTGAAGGATCAAGGCAAAGGTAAAAGTAGTGAGAAGGCAAAAGCAGAACCTAGTAAGGTGGAGATGCATCGAGTGGCTGTTGATATTTTGAAGGAAGTAGATTTCAATAAGGCAACTTTATCTGATATCCTCAGGCAACTTGGTACTCACTTTGATGTGGATTTAATGCATAGAAAAGCAGAGGTGAAGGATATAATTACAGATGTAATTAATAACATGTCTGATGACGATGGAGAGGAAGCAGAAAATGTTGGGGATGATGATGAAGATGATGCATGA
>Glyma05g38280.1 sequence type=predicted peptide gene model=Glyma05g38280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGKMVFDQLIRDGFTLFAIHSLHSPPLSQVSTMSSGTLENEKPQVEEEQAQAEDNHTKQEDNSEMKDDDDRGEEERDQVEQEKDVEKEEEKEEEEEEKEEDRDEVKSKKSTKESGYATPGSERPTRERKTVERYTVSSPDKFPRSSSIKALSIEKGNGTQLKDIPNVAFTLSKRKADDNLHALHSILFGKKAKVHHLKRNIGLFSGYVWTENEEKQRVKIKEKIDKCVKEKLVDFCNVLNIPINKTSKKKEELSAKLLQFLESPHATTDVLLADKEKKGKKRARKQTPSKSSGEGSKTSAKKQKQNSQVGKNQKQSSDIEDSDAAEPSDAKVDSQEDDDSSQKSESDNEESISEKEEDKEKAHKRTSKKILKEDQTTPVKKTTVVKTAKSNEKAPEKSSSKRAVTDSTSKSKQSASKKQKTMKENQNSIGKDANQKQADKSSKALVKDQGKGKSSEKAKAEPSKVEMHRVAVDILKEVDFNKATLSDILRQLGTHFDVDLMHRKAEVKDIITDVINNMSDDDGEEAENVGDDDEDDA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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