SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63510 | AT | Annotation by Michelle Graham. TAIR10: gamma carbonic anhydrase like 1 | chr5:25424054-25425612 FORWARD LENGTH=252 | SoyBase | E_val: 4.00E-141 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005747 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0031966 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane | SoyBase | N/A | ISS |
| GO:0045271 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: respiratory chain complex I | SoyBase | N/A | ISS |
| GO:0004089 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3121 | KOG | Dynactin, subunit p25 | JGI | ISS | |
| PTHR13061 | Panther | DYNACTIN SUBUNIT P25 | JGI | ISS | |
| UniRef100_B9RAD6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein yrdA, putative n=1 Tax=Ricinus communis RepID=B9RAD6_RICCO | SoyBase | E_val: 1.00E-147 | ISS |
| UniRef100_I1K6N2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6N2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g38160 not represented in the dataset |
Glyma05g38160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g01460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g204300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g38160.1 sequence type=CDS gene model=Glyma05g38160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAATCTAGCACACTTCTCCAAGAGAGCCCTAAGAAGCGCACACGCGCTCGCAAGGCACCACGTGCAGCCGCAGCTGCTGGCAGCGGAACGCGCTTTTGCGACGGAGGCGGCGAAATCGATATCCCCGTCGGCGGATCGCGTGAAGTGGGACTACCGAGGGCAGAGGAAGATAATCCCGTTAGGGCAGTGGCTCCCCAAAGTGGCCGTGGATGCTTACGTAGCACCCAACGTGGTCCTCGCCGGCCAAGTCACCGTCTGGGACGGAGCCTCCGTCTGGCCCGGTTGCGTCCTCCGCGGCGATCTCAACAAGATCAGCGTCGGATTCTGCTCCAACGTTCAGGAACGCTCCGTTATTCACGCTGCTTGGTCTTCTCCCACAGGCCTTCCAGCTGACACTTCAATAGAGAGGTACGTGACAATTGGAGCATACAGCCTGTTGAGGTCCTGCACTATTGAGCCAGAGTGCATTATTGGGCAGCACTCCATCCTCATGGAAGGTTCATTGGTGGAGACACAGTCAATCCTTGAAGCAGGGTCAGTAGTTCCACCAGGAAGGCGAATTCCAACAGGAGAACTGTGGGCAGGAAATCCAGCCAGGTTTGTGAGGACTTTGACCCATGAAGAAATCTTAGAAATCCCCAAACTGGCAGTTGCTATAAATGATCTGAGCAGAGACCATTACTCAGAGTTCCTTCCCTATTCCACAGTATATTTGGAGGTTGAGAAGTTTAAGAAGTCTTTGGGTATTTCTGTTTGA
>Glyma05g38160.1 sequence type=predicted peptide gene model=Glyma05g38160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANLAHFSKRALRSAHALARHHVQPQLLAAERAFATEAAKSISPSADRVKWDYRGQRKIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGASVWPGCVLRGDLNKISVGFCSNVQERSVIHAAWSSPTGLPADTSIERYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPGRRIPTGELWAGNPARFVRTLTHEEILEIPKLAVAINDLSRDHYSEFLPYSTVYLEVEKFKKSLGISV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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