Glyma05g38060 - SoyBase

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Report for Sequence Feature Glyma05g38060

Feature Type:	gene_model
Chromosome:	Gm05
Start:	41495784
stop:	41498725
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g38060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20330	AT	Annotation by Michelle Graham. TAIR10: Transcription initiation factor TFIIE, beta subunit \| chr4:10982683-10984039 REVERSE LENGTH=286	SoyBase	E_val: 7.00E-121	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0006367	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription initiation from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005673	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: transcription factor TFIIE complex	SoyBase	N/A	ISS
KOG3095	KOG	Transcription initiation factor IIE, beta subunit	JGI		ISS
PTHR12716	Panther	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	JGI		ISS
UniRef100_G7KDE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: General transcription factor IIE subunit n=1 Tax=Medicago truncatula RepID=G7KDE9_MEDTR	SoyBase	E_val: 6.00E-154	ISS
UniRef100_I1K6L7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6L7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g38060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g38060 not represented in the dataset	Glyma05g38060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g38060

Paralog	Evidence	Comments
Glyma08g01510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g38060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g205200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g38060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g38060

Limit To All Plant Sequences

>Glyma05g38060.5   sequence type=transcript   gene model=Glyma05g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGAAAGTAAAAGCTTAAAGTCTATCCAGAACACAAGACAAGACAGTAACGGCAAAGTCCTTGTCCTTGCTTCCATTCACGATGGCGTTGCAGGAGAAGCTAGACAAGTTCAAGAAGCAGCAAGAGAAGTGCCAAACGACACTTTCGAGCATTGCAGCTAGTAAGGCCGCGGCAACCCAAAAATCCGCCGCTCATGGCTCGGCCAATGGAAGAAACGCGGCCCCTGCGGTTAAGTTTTCGAACGACACAGAGAGGCTTCAGCATATTAATAGCATTCGCAAGGCCCCTGTGGGTGCTCAGATGAAGCGTGTTATTGATCTCCTTCTAGAGACACGACAAGCTTTTACACCAGAGCAGATAAATGGGGCATGCTATGTCGACATGAAGGCTAACAAAGATGTCTTTGAGAATCTGAGGAAAAACCCAAAAGTGAACTATGATGGGCAACGATTCTCTTACAAGTCAAAGTATGGTCTTAAGGACAAAACAGAGCTTCTTCAACTGATACGAAAGTATCCTGAGGGCCTCGCTGTTATTGACCTAAAGGATGCTTACCCCACCGTGATGGAAGATTTGCAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTATCCAACTTCGATTCACAGGAAGACATTGCCTACCCTAACGACCCCAAAGTGCACATTAAGGTGGATGATGACCTGAAACAGCTTTTCCGCAGTATTGAATTGCCTCGTGATATGATTGATATAGAAAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCACAGAGGAGGAGTGCAGCTCAAATTCAAGGCATTTCTTCCAAGCCCAAGCCTAAGAAGAAGAAGAGTGAAATCAGCAAGAGAACGAAGCTTACCAATGCCCATCTTCCAGAGCTCTTTCAGACTTTAAACAGTTCCTGATTAACTCTCAGCAAGTGTTGGTGTAGTTCAAATAGATACTTTATCAGCCAGTCTATAAACTAGATTAGCAGAGTGAAATATTCAGGAGGTTCTTGCTGCTGTGCCCTACTTTTAATTTCTATACATCAAGGCTGCAGCTAATGGACTATTGTGGTCTATAACAACTCGTCTTGTGAATCCCTGTATATTAAAATCATGTTGCATTTAGTTTTCTAGTCTTGTAACTTTTTATACATAAATTATTAGATTGGAAGTTCAATTTTTTTCTTCAACTTATCTAATGAGCTTAAGCAGCTGTATGTTTAACATGGGATAGTAACCTACCCAATGTTTCAAAAGTGGACTTGGTTAAAAATACCCCGAATTCAACGTAAC

>Glyma05g38060.6   sequence type=transcript   gene model=Glyma05g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGAAAGTAAAAGCTTAAAGTCTATCCAGAACACAAGACAAGACAGTAACGGCAAAGTCCTTGTCCTTGCTTCCATTCACGGTTAGCTCCTCTTTCTCTTTGGGACTTGGTTACACTATGCCATGCCTTCCCTTCCCTTGCAAGACTAGGGCATTCATTACTCAATACTCACTCATCCTCCTAAATCTCACTACGCTTCTTTGCTAGCTACGTGATTAGGGTTTTGTTCTATTCCCAATTCCCGCGCTTTCTCTATCGTTGATTGATTTGCACGCACAACTTGAATTTCAAACTGAGCCGTGCGCGTGTTTTTTTTTCAGATGGCGTTGCAGGAGAAGCTAGACAAGTTCAAGAAGCAGCAAGAGAAGTGCCAAACGACACTTTCGAGCATTGCAGCTAGTAAGGCCGCGGCAACCCAAAAATCCGCCGCTCATGGCTCGGCCAATGGAAGAAACGCGGCCCCTGCGGTTAAGTTTTCGAACGACACAGAGAGGCTTCAGCATATTAATAGCATTCGCAAGGCCCCTGTGGGTGCTCAGATGAAGCGTGTTATTGATCTCCTTCTAGAGACACGACAAGCTTTTACACCAGAGCAGATAAATGGGGCATGCTATGTCGACATGAAGGCTAACAAAGATGTCTTTGAGAATCTGAGGAAAAACCCAAAAGTGAACTATGATGGGCAACGATTCTCTTACAAGTCAAAGTATGGTCTTAAGGACAAAACAGAGCTTCTTCAACTGATACGAAAGTATCCTGAGGGCCTCGCTGTTATTGACCTAAAGGATGCTTACCCCACCGTGATGGAAGATTTGCAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTATCCAACTTCGATTCACAGGAAGACATTGCCTACCCTAACGACCCCAAAGTGCACATTAAGGTGGATGATGACCTGAAACAGCTTTTCCGCAGTATTGAATTGCCTCGTGATATGATTGATATAGAAAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCACAGAGGAGGAGTGCAGCTCAAATTCAAGGCATTTCTTCCAAGCCCAAGCCTAAGAAGAAGAAGAGTGAAATCAGCAAGAGAACGAAGCTTACCAATGCCCATCTTCCAGAGCTCTTTCAGACTTTAAACAGTTCCTGATTAACTCTCAGCAAGTGTTGGTGTAGTTCAAATAGATACTTTATCAGCCAGTCTATAAACTAGATTAGCAGAGTGAAATATTCAGGAGGTTCTTGCTGCTGTGCCCTACTTTTAATTTCTATACATCAAGGCTGCAGCTAATGGACTATTGTGGTCTATAACAACTCGTCTTGTGAATCCCTGTATATTAAAATCATGTTGCATTTAGTTTTCTAGTCTTGTAACTTTTTATACATAAATTATTAGATTGGAAGTTCAATTTTTTTCTTCAACTTATCTAATGAGCTTAAGCAGCTGTATGTTTAACATGGGATAGTAACCTACCCAATGTTTCAAAAGTGGACTTGGTTAAAAATACCCCGAATTCAACGTAAC

Coding sequences of Glyma05g38060

Limit To All Plant Sequences

>Glyma05g38060.4   sequence type=CDS   gene model=Glyma05g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTGCAGGAGAAGCTAGACAAGTTCAAGAAGCAGCAAGAGAAGTGCCAAACGACACTTTCGAGCATTGCAGCTAGTAAGGCCGCGGCAACCCAAAAATCCGCCGCTCATGGCTCGGCCAATGGAAGAAACGCGGCCCCTGCGGTTAAGTTTTCGAACGACACAGAGAGGCTTCAGCATATTAATAGCATTCGCAAGGCCCCTGTGGGTGCTCAGATGAAGCGTGTTATTGATCTCCTTCTAGAGACACGACAAGCTTTTACACCAGAGCAGATAAATGGGGCATGCTATGTCGACATGAAGGCTAACAAAGATGTCTTTGAGAATCTGAGGAAAAACCCAAAAGTGAACTATGATGGGCAACGATTCTCTTACAAGTCAAAGTATGGTCTTAAGGACAAAACAGAGCTTCTTCAACTGATACGAAAGTATCCTGAGGGCCTCGCTGTTATTGACCTAAAGGATGCTTACCCCACCGTGATGGAAGATTTGCAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTATCCAACTTCGATTCACAGGAAGACATTGCCTACCCTAACGACCCCAAAGTGCACATTAAGGTGGATGATGACCTGAAACAGCTTTTCCGCAGTATTGAATTGCCTCGTGATATGATTGATATAGAAAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCACAGAGGAGGAGTGCAGCTCAAATTCAAGGCATTTCTTCCAAGCCCAAGCCTAAGAAGAAGAAGAGTGAAATCAGCAAGAGAACGAAGCTTACCAATGCCCATCTTCCAGAGCTCTTTCAGACTTTAAACAGTTCCTGA

>Glyma05g38060.5   sequence type=CDS   gene model=Glyma05g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTGCAGGAGAAGCTAGACAAGTTCAAGAAGCAGCAAGAGAAGTGCCAAACGACACTTTCGAGCATTGCAGCTAGTAAGGCCGCGGCAACCCAAAAATCCGCCGCTCATGGCTCGGCCAATGGAAGAAACGCGGCCCCTGCGGTTAAGTTTTCGAACGACACAGAGAGGCTTCAGCATATTAATAGCATTCGCAAGGCCCCTGTGGGTGCTCAGATGAAGCGTGTTATTGATCTCCTTCTAGAGACACGACAAGCTTTTACACCAGAGCAGATAAATGGGGCATGCTATGTCGACATGAAGGCTAACAAAGATGTCTTTGAGAATCTGAGGAAAAACCCAAAAGTGAACTATGATGGGCAACGATTCTCTTACAAGTCAAAGTATGGTCTTAAGGACAAAACAGAGCTTCTTCAACTGATACGAAAGTATCCTGAGGGCCTCGCTGTTATTGACCTAAAGGATGCTTACCCCACCGTGATGGAAGATTTGCAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTATCCAACTTCGATTCACAGGAAGACATTGCCTACCCTAACGACCCCAAAGTGCACATTAAGGTGGATGATGACCTGAAACAGCTTTTCCGCAGTATTGAATTGCCTCGTGATATGATTGATATAGAAAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCACAGAGGAGGAGTGCAGCTCAAATTCAAGGCATTTCTTCCAAGCCCAAGCCTAAGAAGAAGAAGAGTGAAATCAGCAAGAGAACGAAGCTTACCAATGCCCATCTTCCAGAGCTCTTTCAGACTTTAAACAGTTCCTGA

>Glyma05g38060.6   sequence type=CDS   gene model=Glyma05g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTGCAGGAGAAGCTAGACAAGTTCAAGAAGCAGCAAGAGAAGTGCCAAACGACACTTTCGAGCATTGCAGCTAGTAAGGCCGCGGCAACCCAAAAATCCGCCGCTCATGGCTCGGCCAATGGAAGAAACGCGGCCCCTGCGGTTAAGTTTTCGAACGACACAGAGAGGCTTCAGCATATTAATAGCATTCGCAAGGCCCCTGTGGGTGCTCAGATGAAGCGTGTTATTGATCTCCTTCTAGAGACACGACAAGCTTTTACACCAGAGCAGATAAATGGGGCATGCTATGTCGACATGAAGGCTAACAAAGATGTCTTTGAGAATCTGAGGAAAAACCCAAAAGTGAACTATGATGGGCAACGATTCTCTTACAAGTCAAAGTATGGTCTTAAGGACAAAACAGAGCTTCTTCAACTGATACGAAAGTATCCTGAGGGCCTCGCTGTTATTGACCTAAAGGATGCTTACCCCACCGTGATGGAAGATTTGCAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTATCCAACTTCGATTCACAGGAAGACATTGCCTACCCTAACGACCCCAAAGTGCACATTAAGGTGGATGATGACCTGAAACAGCTTTTCCGCAGTATTGAATTGCCTCGTGATATGATTGATATAGAAAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCACAGAGGAGGAGTGCAGCTCAAATTCAAGGCATTTCTTCCAAGCCCAAGCCTAAGAAGAAGAAGAGTGAAATCAGCAAGAGAACGAAGCTTACCAATGCCCATCTTCCAGAGCTCTTTCAGACTTTAAACAGTTCCTGA

Predicted protein sequences of Glyma05g38060

Limit To All Plant Sequences

>Glyma05g38060.4   sequence type=predicted peptide   gene model=Glyma05g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALQEKLDKFKKQQEKCQTTLSSIAASKAAATQKSAAHGSANGRNAAPAVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLETRQAFTPEQINGACYVDMKANKDVFENLRKNPKVNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPKVHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAQRRSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQTLNSS*

>Glyma05g38060.5   sequence type=predicted peptide   gene model=Glyma05g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALQEKLDKFKKQQEKCQTTLSSIAASKAAATQKSAAHGSANGRNAAPAVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLETRQAFTPEQINGACYVDMKANKDVFENLRKNPKVNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPKVHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAQRRSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQTLNSS*

>Glyma05g38060.6   sequence type=predicted peptide   gene model=Glyma05g38060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALQEKLDKFKKQQEKCQTTLSSIAASKAAATQKSAAHGSANGRNAAPAVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLETRQAFTPEQINGACYVDMKANKDVFENLRKNPKVNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPKVHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAQRRSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQTLNSS*

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