SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63260 | AT | Annotation by Michelle Graham. TAIR10: tetraspanin10 | chr1:23466975-23468945 REVERSE LENGTH=258 | SoyBase | E_val: 2.00E-146 | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| PTHR19282 | Panther | TETRASPANIN | JGI | ISS | |
| PTHR19282:SF136 | Panther | JGI | ISS | ||
| PF00335 | PFAM | Tetraspanin family | JGI | ISS | |
| UniRef100_F4I214 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tetraspanin10 n=1 Tax=Arabidopsis thaliana RepID=F4I214_ARATH | SoyBase | E_val: 1.00E-137 | ISS |
| UniRef100_UPI00023399DF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023399DF related cluster n=1 Tax=unknown RepID=UPI00023399DF | SoyBase | E_val: 0 | ISS |
|
Glyma05g38020 not represented in the dataset |
Glyma05g38020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g01550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g205600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g38020.2 sequence type=transcript gene model=Glyma05g38020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGATATGCACTTTGTTGATGTTCTGGGTTAAACAACAAATATTTCGAACAGCCTGGGCTTACGTTGTACTGGGAATGTGTGACCACAAGTTTGAATTCTCCATAATTAAAGACAGCTTTCATTTCTTTTCATTTTTATGTTTATTTTTTCATAAAAAAGAGACAGCTTTCTTTGTTTTGTGATACTGTTACGCTCGAGTGTGCGTAGCATCGGGTATCGTGTCGTAAGATGTTGGATTTCTTGGCGTACACCGTGCGGCGCATCTTCATCAAACATAATGCACCCGCTTCATGATCATGATGTGAAACTGAAACTGCTCCTTCCCTTCCTTAACCCCTACACTTCAAGTTTTCCCTCCGCGGAACAAAATGGGAATGGGAACTAGCACCTTTGTTACTAGATGGATCAACTTTCTCACCATGCTTTTGGCCATTGCTGTGATAATATTTGGAGTGTGGATGAGCACTCATCATGATGGCTGCCGAAAGTCTCTCACCGTGCCTGTGATAGGCCTCGGAGCAGTTATTTTCTTAATATCTGTAGTTGGCTTTTTGGGTGCCCTGAAAAACATCTCCATACTATTATGGATTTATCTGATCACCCTGTTCTTTGTCTTGGTGGGAATTCTGGTCTTCACAGTATTGGTGTTCATCGTGACTAACAACGGATCAGGTCATAGTGTTACTGGTTTAAGGTATAAGGAATACCAACTTCAAGATTTTAGTTCTTGGTTTCTCAAAGAGTTAAACAATTCTCGTAACTGGGAGAGGTTGAAGGTTTGTCTTGTCAAATCTGATGACTGCAATAACCTATCCAAAAAATATAAGACTCCTAAACAATATAAATCAGCTAAATTGTCACCAATTGAAGCTGGCTGCTGCCGACCGCCTTCCCAATGTGGATATCCTGCTGTAAATGCATCCTACTATGACTTGACCTTTCATCCAGTTAGCCCAAACAATGACTGCAAGCGGTACAAGAATTATCGGGCCGTCAAATGCTATGATTGTGACTCTTGCAAGGCTGGTGTGGCACAATACATGAAAACCGAGTGGAGAGTTGTTGCAATATTTAATGTTGTTTTATTTGTTGTCTTGTGTATTATATACTTCGTGGGATGCTGCGCGAGACGAAATGCTGCAAGGAGCCATTCTAAAGCTTGAAGGGAACCTCCTCTATCTATGAACCCATCATCAAATCAAATGCTTTTGAAATTCTTAAAGAAGAAATCAGTGTACTGGGCTAGAGATAAAAACTCCTCAAATTCAAGTTATTTATAGGAACCCTAGTGGTGGATTGTGTAATCTTTGTGAACACCATGACTTGATTTGTTTTATTATTTGATTTGATGTGAATAGAAAATCCAAAATCAGAAATCTCTACAAGCCAAAGATTAACGTCTGGTTTGTTCGCTAAGATAATATTTGAAGTTAAAAACCTTTTATCAGTGTAGCGTTTGTTAATGCAGCATAAAGTTAGTGTTAAGGAAATTATAAGTCAGTTTCATTTAATCCCACATCAAACTTGTTACTTTATACAAAATGTCGAATAAAGGTCCTGA
>Glyma05g38020.1 sequence type=CDS gene model=Glyma05g38020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAATGGGAACTAGCACCTTTGTTACTAGATGGATCAACTTTCTCACCATGCTTTTGGCCATTGCTGTGATAATATTTGGAGTGTGGATGAGCACTCATCATGATGGCTGCCGAAAGTCTCTCACCGTGCCTGTGATAGGCCTCGGAGCAGTTATTTTCTTAATATCTGTAGTTGGCTTTTTGGGTGCCCTGAAAAACATCTCCATACTATTATGGATTTATCTGATCACCCTGTTCTTTGTCTTGGTGGGAATTCTGGTCTTCACAGTATTGGTGTTCATCGTGACTAACAACGGATCAGGTCATAGTGTTACTGGTTTAAGGTATAAGGAATACCAACTTCAAGATTTTAGTTCTTGGTTTCTCAAAGAGTTAAACAATTCTCGTAACTGGGAGAGGTTGAAGGTTTGTCTTGTCAAATCTGATGACTGCAATAACCTATCCAAAAAATATAAGACTCCTAAACAATATAAATCAGCTAAATTGTCACCAATTGAAGCTGGCTGCTGCCGACCGCCTTCCCAATGTGGATATCCTGCTGTAAATGCATCCTACTATGACTTGACCTTTCATCCAGTTAGCCCAAACAATGACTGCAAGCGGTACAAGAATTATCGGGCCGTCAAATGCTATGATTGTGACTCTTGCAAGGCTGGTGTGGCACAATACATGAAAACCGAGTGGAGAGTTGTTGCAATATTTAATGTTGTTTTATTTGTTGTCTTGTGTATTATATACTTCGTGGGATGCTGCGCGAGACGAAATGCTGCAAGGAGCCATTCTAAAGCTTGA >Glyma05g38020.2 sequence type=CDS gene model=Glyma05g38020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAATGGGAACTAGCACCTTTGTTACTAGATGGATCAACTTTCTCACCATGCTTTTGGCCATTGCTGTGATAATATTTGGAGTGTGGATGAGCACTCATCATGATGGCTGCCGAAAGTCTCTCACCGTGCCTGTGATAGGCCTCGGAGCAGTTATTTTCTTAATATCTGTAGTTGGCTTTTTGGGTGCCCTGAAAAACATCTCCATACTATTATGGATTTATCTGATCACCCTGTTCTTTGTCTTGGTGGGAATTCTGGTCTTCACAGTATTGGTGTTCATCGTGACTAACAACGGATCAGGTCATAGTGTTACTGGTTTAAGGTATAAGGAATACCAACTTCAAGATTTTAGTTCTTGGTTTCTCAAAGAGTTAAACAATTCTCGTAACTGGGAGAGGTTGAAGGTTTGTCTTGTCAAATCTGATGACTGCAATAACCTATCCAAAAAATATAAGACTCCTAAACAATATAAATCAGCTAAATTGTCACCAATTGAAGCTGGCTGCTGCCGACCGCCTTCCCAATGTGGATATCCTGCTGTAAATGCATCCTACTATGACTTGACCTTTCATCCAGTTAGCCCAAACAATGACTGCAAGCGGTACAAGAATTATCGGGCCGTCAAATGCTATGATTGTGACTCTTGCAAGGCTGGTGTGGCACAATACATGAAAACCGAGTGGAGAGTTGTTGCAATATTTAATGTTGTTTTATTTGTTGTCTTGTGTATTATATACTTCGTGGGATGCTGCGCGAGACGAAATGCTGCAAGGAGCCATTCTAAAGCTTGA
>Glyma05g38020.1 sequence type=predicted peptide gene model=Glyma05g38020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGMGTSTFVTRWINFLTMLLAIAVIIFGVWMSTHHDGCRKSLTVPVIGLGAVIFLISVVGFLGALKNISILLWIYLITLFFVLVGILVFTVLVFIVTNNGSGHSVTGLRYKEYQLQDFSSWFLKELNNSRNWERLKVCLVKSDDCNNLSKKYKTPKQYKSAKLSPIEAGCCRPPSQCGYPAVNASYYDLTFHPVSPNNDCKRYKNYRAVKCYDCDSCKAGVAQYMKTEWRVVAIFNVVLFVVLCIIYFVGCCARRNAARSHSKA* >Glyma05g38020.2 sequence type=predicted peptide gene model=Glyma05g38020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGMGTSTFVTRWINFLTMLLAIAVIIFGVWMSTHHDGCRKSLTVPVIGLGAVIFLISVVGFLGALKNISILLWIYLITLFFVLVGILVFTVLVFIVTNNGSGHSVTGLRYKEYQLQDFSSWFLKELNNSRNWERLKVCLVKSDDCNNLSKKYKTPKQYKSAKLSPIEAGCCRPPSQCGYPAVNASYYDLTFHPVSPNNDCKRYKNYRAVKCYDCDSCKAGVAQYMKTEWRVVAIFNVVLFVVLCIIYFVGCCARRNAARSHSKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
