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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma05g38000

Feature Type:gene_model
Chromosome:Gm05
Start:41467340
stop:41469420
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39900AT Annotation by Michelle Graham. TAIR10: GATA type zinc finger transcription factor family protein | chr2:16659136-16660267 FORWARD LENGTH=200 SoyBaseE_val: 2.00E-82ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0051017GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0015629GO-cc Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0051015GO-mf Annotation by Michelle Graham. GO Molecular Function: actin filament binding SoyBaseN/AISS
KOG1700 KOG Regulatory protein MLP and related LIM proteins JGI ISS
PTHR24206Panther FAMILY NOT NAMED JGI ISS
PTHR24206:SF66Panther JGI ISS
PF00412PFAM LIM domain JGI ISS
UniRef100_B9RC84UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pollen-specific protein SF3, putative n=1 Tax=Ricinus communis RepID=B9RC84_RICCO SoyBaseE_val: 5.00E-92ISS
UniRef100_I1K6L0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6L0_SOYBN SoyBaseE_val: 3.00E-162ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g38000 not represented in the dataset

Glyma05g38000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g01580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g205800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g38000.1   sequence type=CDS   gene model=Glyma05g38000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTCAGCGGGACCCAACAGAAATGCAAGGCTTGCGACAAAACTGTTCACTTTGTCGAAGGTTTATCTGCCGATGGAGCTGCTTATCACAAGAACTGCTTCAGATGCAGCCATTGCAATGGCCTTCTTGCGATAAGCAATTACTCATCCACCGAAGGAGTTTTGTACTGCAAGGTGCACTTTGAGCAGCTTTTCAAGGAAACTGGAACCTACCCCAAGAAATCCCAGTCGTCTGGAAAGCCTCCACTCGAGCTGAATAGAGCACCAAGCAAGCTTTCTGCCTTCTTCTCTGGGACTCAAGAGAAATGTTCAAAATGCAAGAAAACCGTATATCCATTGGAGAAGTTGACCGTGGAAGGCGAGTTTTACCACAAATCATGCTTTAGGTGTGCACATGGAGGATGTTTCCTGACCCCTTCAACCTATGCTGCTCTAGATGGATATCTTTACTGCAAGCCCCACTTCTCTCAGTTGTTCAAGGAGAAGGGTAGCTACAGTTATCTGTCCAAGCAAGCTTCATTGAAGAAAAGTGAAATGCAACAACAAGAACAAGAGGCTGTGGAGAAAGCTACTACAACCGATGATGATCGCTCAGAGTCAGAGCCAGACACGACAACAACAACAAAGGAAGCTGAACAAGCTGATGATGATCACTCTGAGCAAGAGCACTAG

>Glyma05g38000.1   sequence type=predicted peptide   gene model=Glyma05g38000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFSGTQQKCKACDKTVHFVEGLSADGAAYHKNCFRCSHCNGLLAISNYSSTEGVLYCKVHFEQLFKETGTYPKKSQSSGKPPLELNRAPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKKSEMQQQEQEAVEKATTTDDDRSESEPDTTTTTKEAEQADDDHSEQEH*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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