Glyma05g37930 - SoyBase

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Report for Sequence Feature Glyma05g37930

Feature Type:	gene_model
Chromosome:	Gm05
Start:	41403365
stop:	41408278
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g37930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11640	AT	Annotation by Michelle Graham. TAIR10: serine racemase \| chr4:7021770-7023252 FORWARD LENGTH=331	SoyBase	E_val: 1.00E-176	ISS
GO:0006563	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-serine metabolic process	SoyBase	N/A	ISS
GO:0009069	GO-bp	Annotation by Michelle Graham. GO Biological Process: serine family amino acid metabolic process	SoyBase	N/A	ISS
GO:0070178	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-serine metabolic process	SoyBase	N/A	ISS
GO:0003941	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-serine ammonia-lyase activity	SoyBase	N/A	ISS
GO:0008721	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-serine ammonia-lyase activity	SoyBase	N/A	ISS
GO:0030378	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine racemase activity	SoyBase	N/A	ISS
KOG1251	KOG	Serine racemase	JGI		ISS
PTHR10314	Panther	PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY	JGI		ISS
PTHR10314:SF36	Panther	THREONINE DEHYDRATASE-RELATED	JGI		ISS
PF00291	PFAM	Pyridoxal-phosphate dependent enzyme	JGI		ISS
UniRef100_G7LI09	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine racemase n=2 Tax=Medicago truncatula RepID=G7LI09_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K6K2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6K2_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g37930

Locus	Gene Symbol	Protein Name
	SR1	Serine racemase-1 involved in D-Serine biosynthetic process

Expression Patterns of Glyma05g37930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g37930

Paralog	Evidence	Comments
Glyma08g01670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g37930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g206600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g37930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g37930

Limit To All Plant Sequences

>Glyma05g37930.4   sequence type=transcript   gene model=Glyma05g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGATTGGCAGTACCCCAGTTGTCCCCAGTCACCATGATGCTCCTAATTTTCATAGACTTGAGAATGGAAATGACTTCTTGTGCAGCTGGTTTCAATGGATCAGATACTACTAAAACCCCAACTACTTCCCTATTTATAGACACTATAATTCCAGTTTGAGCCATTCCTTCCGCTGCTGCAAGTATCTCTTCAGAATCAACAGGAAGTGCAACATTGTGGTCCGCCATCAAGGTCTTGTTAACCATAAGTCAATTAACTCGAGTGAGGGAGGGTTCATTTCTCGGATAGGAAGTGGAAGTGAGAGTGACGAGGAGAGCCACCAAGCAGAACTGCTTCAGGTTGCCAACTATTAGCTCACTTTCATAGTGAAAGAAGAAAATTGGTGGATTGGAACTAAACATTGTTTCTGTTGGAAAGACAAATACCCACTGATCTGTCTTTATTCGCTTCTGAGATGGAAGAAGAGAGCCAAATAACAAAGGGAAAATATGCTGCTGATATTTCTTCCATAAAAGAAGCACATGCCAGAATAAAATCATTGGTTCATAAAACTCCGCTTCTGTCCTCCAGCTCTCTGAATGCTATGTCAGGAAGGAAGCTCTACTTTAAATGTGAATGTTTACAAAAGGGTGGAGCTTTTAAATTTAGGGGAGCCTGCAATGCTGTGTTTTCTCTCAATGATGAAGATGCTTCTAAAGGGGTTGTAACACACAGCAGTGGAAACCATGCCGCAGCATTGGCTTTGGCTGCAAAACTACGGGGGATCCCTTCGTATATTGTTATTCCAAAAAATGCCCCAACTTGCAAAATTGAAAATGTAAAGCGGTATGGTGGTCAGGTTGTCTGGTCTGAAGCCTCTGTTCAATCAAGGGAAGAAATTGCCAACAAAGTGTGGCAAGAAAGTGGTGCTATCTTTATACATCCATATAATGATGGACGCATATTAAGTGGCCAGGGTACCATATCCTTGGAGATTCTGGAACAAGCACCACAAATAGATACGCTAGTAGTACCCATAAGTGGTGGTGGTTTGATATCAGGAATAGCATTGGCTGCCAAGTCCATTAACCCAGCTATTCGTATTTTTGCTGCTGAACCTAAAGGTGCTGATGATGCAGCACAATCTAAAGCAGCTGGGAGGATAATACGATTGCCTGAGACCAACACTATAGCTGACGGGCTTCGAGCATTTCTTGGAGATTTCACATGGCCTGTTGTACGAGATCTTGTTGAGGAAATTATAACTGTTGAAGACAGTGAAATAATAAAAGCCATGAAACTGTGTTTTGAAATTCTTAAGGTTGTTGTAGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGATACTTTCCAGAAAAATCCTGCATGGAAGGATTGCAACCATATAGGAATAGTAGTTTCAGGAGGCAATGTTGATCTGGCCATGCTTTGGGATTCTTTGAACAAAGGAAAGTGACTTCTTTTTGTTTTGCTTATGTGGACCTTCATTGTTCTCTATGTGAGTGTAAATGATCCAATTTGTATGGACAAGTCTATTCCATTCCTTTTAGTTAACTTGTTGGGTTGAAATTCTTGTTTGTCAAGAATTATTTAAACAGTTGTTTTCTTCTTGTTTTAAAGAGAGAGAGAGAGAAAAAAAAATTAAAGCTGATAGTTAATTAATAGAGTGAATTCTTTACATTCCTGAAAAGGTACTCTCTAATAGTTCCATTAATTTAAGCAAACGAACGTATGGAACCCCATTTTTTTAAGAGCGCGCCTTGTAAAAATTGATAGTGGA

>Glyma05g37930.5   sequence type=transcript   gene model=Glyma05g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAATTTCAATGAATCAATTTTAAAAACAATGTTTAAAAAATAAAGAGCTATAATATAAGATTTTAAATTGAAGAGAAAACGAAATTTCCTAACAAGATTTAATTATTAATTAACTAGAACTCGAGTGAGGGAGGGTTCATTTCTCGGATAGGAAGTGGAAGTGAGAGTGACGAGGAGAGCCACCAAGCAGAACTGCTTCAGGTTGCCAACTATTAGCTCACTTTCATAGTGAAAGAAGAAAATTGGTGGATTGGAACTAAACATTGTTTCTGTTGGAAAGACAAATACCCACTGATCTGTCTTTATTCGCTTCTGAGATGGAAGAAGAGAGCCAAATAACAAAGGGAAAATATGCTGCTGATATTTCTTCCATAAAAGAAGCACATGCCAGAATAAAATCATTGGTTCATAAAACTCCGCTTCTGTCCTCCAGCTCTCTGAATGCTATGTCAGGAAGGAAGCTCTACTTTAAATGTGAATGTTTACAAAAGGGTGGAGCTTTTAAATTTAGGGGAGCCTGCAATGCTGTGTTTTCTCTCAATGATGAAGATGCTTCTAAAGGGGTTGTAACACACAGCAGTGGAAACCATGCCGCAGCATTGGCTTTGGCTGCAAAACTACGGGGGATCCCTTCGTATATTGTTATTCCAAAAAATGCCCCAACTTGCAAAATTGAAAATGTAAAGCGGTATGGTGGTCAGGTTGTCTGGTCTGAAGCCTCTGTTCAATCAAGGGAAGAAATTGCCAACAAAGTGTGGCAAGAAAGTGGTGCTATCTTTATACATCCATATAATGATGGACGCATATTAAGTGGCCAGGGTACCATATCCTTGGAGATTCTGGAACAAGCACCACAAATAGATACGCTAGTAGTACCCATAAGTGGTGGTGGTTTGATATCAGGAATAGCATTGGCTGCCAAGTCCATTAACCCAGCTATTCGTATTTTTGCTGCTGAACCTAAAGGTGCTGATGATGCAGCACAATCTAAAGCAGCTGGGAGGATAATACGATTGCCTGAGACCAACACTATAGCTGACGGGCTTCGAGCATTTCTTGGAGATTTCACATGGCCTGTTGTACGAGATCTTGTTGAGGAAATTATAACTGTTGAAGACAGTGAAATAATAAAAGCCATGAAACTGTGTTTTGAAATTCTTAAGGTTGTTGTAGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGATACTTTCCAGAAAAATCCTGCATGGAAGGATTGCAACCATATAGGAATAGTAGTTTCAGGAGGCAATGTTGATCTGGCCATGCTTTGGGATTCTTTGAACAAAGGAAAGTGACTTCTTTTTGTTTTGCTTATGTGGACCTTCATTGTTCTCTATGTGAGTGTAAATGATCCAATTTGTATGGACAAGTCTATTCCATTCCTTTTAGTTAACTTGTTGGGTTGAAATTCTTGTTTGTCAAGAATTATTTAAACAGTTGTTTTCTTCTTGTTTTAAAGAGAGAGAGAGAGAAAAAAAAATTAAAGCTGATAGTTAATTAATAGAGTGAATTCTTTACATTCCTGAAAAGGTACTCTCTAATAGTTCCATTAATTTAAGCAAACGAACGTATGGAACCCCATTTTTTTAAGAGCGCGCCTTGTAAAAATTGATAGTGGA

Coding sequences of Glyma05g37930

Limit To All Plant Sequences

>Glyma05g37930.3   sequence type=CDS   gene model=Glyma05g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAGAGCCAAATAACAAAGGGAAAATATGCTGCTGATATTTCTTCCATAAAAGAAGCACATGCCAGAATAAAATCATTGGTTCATAAAACTCCGCTTCTGTCCTCCAGCTCTCTGAATGCTATGTCAGGAAGGAAGCTCTACTTTAAATGTGAATGTTTACAAAAGGGTGGAGCTTTTAAATTTAGGGGAGCCTGCAATGCTGTGTTTTCTCTCAATGATGAAGATGCTTCTAAAGGGGTTGTAACACACAGCAGTGGAAACCATGCCGCAGCATTGGCTTTGGCTGCAAAACTACGGGGGATCCCTTCGTATATTGTTATTCCAAAAAATGCCCCAACTTGCAAAATTGAAAATGTAAAGCGGTATGGTGGTCAGGTTGTCTGGTCTGAAGCCTCTGTTCAATCAAGGGAAGAAATTGCCAACAAAGTGTGGCAAGAAAGTGGTGCTATCTTTATACATCCATATAATGATGGACGCATATTAAGTGGCCAGGGTACCATATCCTTGGAGATTCTGGAACAAGCACCACAAATAGATACGCTAGTAGTACCCATAAGTGGTGGTGGTTTGATATCAGGAATAGCATTGGCTGCCAAGTCCATTAACCCAGCTATTCGTATTTTTGCTGCTGAACCTAAAGGTGCTGATGATGCAGCACAATCTAAAGCAGCTGGGAGGATAATACGATTGCCTGAGACCAACACTATAGCTGACGGGCTTCGAGCATTTCTTGGAGATTTCACATGGCCTGTTGTACGAGATCTTGTTGAGGAAATTATAACTGTTGAAGACAGTGAAATAATAAAAGCCATGAAACTGTGTTTTGAAATTCTTAAGGTTGTTGTAGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGATACTTTCCAGAAAAATCCTGCATGGAAGGATTGCAACCATATAGGAATAGTAGTTTCAGGAGGCAATGTTGATCTGGCCATGCTTTGGGATTCTTTGAACAAAGGAAAGTGA

>Glyma05g37930.4   sequence type=CDS   gene model=Glyma05g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAGAGCCAAATAACAAAGGGAAAATATGCTGCTGATATTTCTTCCATAAAAGAAGCACATGCCAGAATAAAATCATTGGTTCATAAAACTCCGCTTCTGTCCTCCAGCTCTCTGAATGCTATGTCAGGAAGGAAGCTCTACTTTAAATGTGAATGTTTACAAAAGGGTGGAGCTTTTAAATTTAGGGGAGCCTGCAATGCTGTGTTTTCTCTCAATGATGAAGATGCTTCTAAAGGGGTTGTAACACACAGCAGTGGAAACCATGCCGCAGCATTGGCTTTGGCTGCAAAACTACGGGGGATCCCTTCGTATATTGTTATTCCAAAAAATGCCCCAACTTGCAAAATTGAAAATGTAAAGCGGTATGGTGGTCAGGTTGTCTGGTCTGAAGCCTCTGTTCAATCAAGGGAAGAAATTGCCAACAAAGTGTGGCAAGAAAGTGGTGCTATCTTTATACATCCATATAATGATGGACGCATATTAAGTGGCCAGGGTACCATATCCTTGGAGATTCTGGAACAAGCACCACAAATAGATACGCTAGTAGTACCCATAAGTGGTGGTGGTTTGATATCAGGAATAGCATTGGCTGCCAAGTCCATTAACCCAGCTATTCGTATTTTTGCTGCTGAACCTAAAGGTGCTGATGATGCAGCACAATCTAAAGCAGCTGGGAGGATAATACGATTGCCTGAGACCAACACTATAGCTGACGGGCTTCGAGCATTTCTTGGAGATTTCACATGGCCTGTTGTACGAGATCTTGTTGAGGAAATTATAACTGTTGAAGACAGTGAAATAATAAAAGCCATGAAACTGTGTTTTGAAATTCTTAAGGTTGTTGTAGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGATACTTTCCAGAAAAATCCTGCATGGAAGGATTGCAACCATATAGGAATAGTAGTTTCAGGAGGCAATGTTGATCTGGCCATGCTTTGGGATTCTTTGAACAAAGGAAAGTGA

>Glyma05g37930.5   sequence type=CDS   gene model=Glyma05g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAGAGCCAAATAACAAAGGGAAAATATGCTGCTGATATTTCTTCCATAAAAGAAGCACATGCCAGAATAAAATCATTGGTTCATAAAACTCCGCTTCTGTCCTCCAGCTCTCTGAATGCTATGTCAGGAAGGAAGCTCTACTTTAAATGTGAATGTTTACAAAAGGGTGGAGCTTTTAAATTTAGGGGAGCCTGCAATGCTGTGTTTTCTCTCAATGATGAAGATGCTTCTAAAGGGGTTGTAACACACAGCAGTGGAAACCATGCCGCAGCATTGGCTTTGGCTGCAAAACTACGGGGGATCCCTTCGTATATTGTTATTCCAAAAAATGCCCCAACTTGCAAAATTGAAAATGTAAAGCGGTATGGTGGTCAGGTTGTCTGGTCTGAAGCCTCTGTTCAATCAAGGGAAGAAATTGCCAACAAAGTGTGGCAAGAAAGTGGTGCTATCTTTATACATCCATATAATGATGGACGCATATTAAGTGGCCAGGGTACCATATCCTTGGAGATTCTGGAACAAGCACCACAAATAGATACGCTAGTAGTACCCATAAGTGGTGGTGGTTTGATATCAGGAATAGCATTGGCTGCCAAGTCCATTAACCCAGCTATTCGTATTTTTGCTGCTGAACCTAAAGGTGCTGATGATGCAGCACAATCTAAAGCAGCTGGGAGGATAATACGATTGCCTGAGACCAACACTATAGCTGACGGGCTTCGAGCATTTCTTGGAGATTTCACATGGCCTGTTGTACGAGATCTTGTTGAGGAAATTATAACTGTTGAAGACAGTGAAATAATAAAAGCCATGAAACTGTGTTTTGAAATTCTTAAGGTTGTTGTAGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGATACTTTCCAGAAAAATCCTGCATGGAAGGATTGCAACCATATAGGAATAGTAGTTTCAGGAGGCAATGTTGATCTGGCCATGCTTTGGGATTCTTTGAACAAAGGAAAGTGA

Predicted protein sequences of Glyma05g37930

Limit To All Plant Sequences

>Glyma05g37930.3   sequence type=predicted peptide   gene model=Glyma05g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESQITKGKYAADISSIKEAHARIKSLVHKTPLLSSSSLNAMSGRKLYFKCECLQKGGAFKFRGACNAVFSLNDEDASKGVVTHSSGNHAAALALAAKLRGIPSYIVIPKNAPTCKIENVKRYGGQVVWSEASVQSREEIANKVWQESGAIFIHPYNDGRILSGQGTISLEILEQAPQIDTLVVPISGGGLISGIALAAKSINPAIRIFAAEPKGADDAAQSKAAGRIIRLPETNTIADGLRAFLGDFTWPVVRDLVEEIITVEDSEIIKAMKLCFEILKVVVEPSGAIGLAAVLSDTFQKNPAWKDCNHIGIVVSGGNVDLAMLWDSLNKGK*

>Glyma05g37930.4   sequence type=predicted peptide   gene model=Glyma05g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESQITKGKYAADISSIKEAHARIKSLVHKTPLLSSSSLNAMSGRKLYFKCECLQKGGAFKFRGACNAVFSLNDEDASKGVVTHSSGNHAAALALAAKLRGIPSYIVIPKNAPTCKIENVKRYGGQVVWSEASVQSREEIANKVWQESGAIFIHPYNDGRILSGQGTISLEILEQAPQIDTLVVPISGGGLISGIALAAKSINPAIRIFAAEPKGADDAAQSKAAGRIIRLPETNTIADGLRAFLGDFTWPVVRDLVEEIITVEDSEIIKAMKLCFEILKVVVEPSGAIGLAAVLSDTFQKNPAWKDCNHIGIVVSGGNVDLAMLWDSLNKGK*

>Glyma05g37930.5   sequence type=predicted peptide   gene model=Glyma05g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESQITKGKYAADISSIKEAHARIKSLVHKTPLLSSSSLNAMSGRKLYFKCECLQKGGAFKFRGACNAVFSLNDEDASKGVVTHSSGNHAAALALAAKLRGIPSYIVIPKNAPTCKIENVKRYGGQVVWSEASVQSREEIANKVWQESGAIFIHPYNDGRILSGQGTISLEILEQAPQIDTLVVPISGGGLISGIALAAKSINPAIRIFAAEPKGADDAAQSKAAGRIIRLPETNTIADGLRAFLGDFTWPVVRDLVEEIITVEDSEIIKAMKLCFEILKVVVEPSGAIGLAAVLSDTFQKNPAWKDCNHIGIVVSGGNVDLAMLWDSLNKGK*

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