Glyma05g37820 - SoyBase

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Report for Sequence Feature Glyma05g37820

Feature Type:	gene_model
Chromosome:	Gm05
Start:	41332477
stop:	41337555
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g37820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11450	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3527) \| chr4:6959065-6961223 REVERSE LENGTH=694	SoyBase	E_val: 3.00E-136	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF12043	PFAM	Domain of unknown function (DUF3527)	JGI		ISS
UniRef100_Q10T04	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10T04_ORYSJ	SoyBase	E_val: 7.00E-54	ISS
UniRef100_UPI00023399B4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023399B4 related cluster n=1 Tax=unknown RepID=UPI00023399B4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g37820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g37820 not represented in the dataset	Glyma05g37820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g37820

Paralog	Evidence	Comments
Glyma08g01780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g37820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g207900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g37820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g37820

Limit To All Plant Sequences

>Glyma05g37820.3   sequence type=transcript   gene model=Glyma05g37820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGAACATGGCATGATGGTGCTTGAAGAGCATGCCTTTGTTTTAGTAGGGTCATCATGTGCATTAACGTAGCTTGGTGCTGTTACTCATGTGAGAGAGAGTTCAATGCTTCTCTGAGTTCTCTCTCTTGCACTCTGTTGTTTCCGTTACTGTTTCTAACAAAGCTTTTTGGCACCATTTGCCATTGAGGTGATTGAACTGAGCTTTCTTTTTGTTTCAGTCTCCCCCACTGCTTTTTGTGAATGAGTTACAAAACAACACAAATGGCCCAGGACTTTACTCTTTAATCAAATGGGTTGGTTTCTTAAGTTATTCTCCTGCACACTTTATGCTCAAGTTTGGAGATTTATGATTGTGCATTGAAGCTGCTTCTTGGGGTTCACCTTTTCTTCAGTTTACTTCTCCAAGATCTACTCTAGTCTTTGGATTCATCAATGGGACAAGAGTTGGAGCTGGATCTTGATGACAAGTCTTCAGTGGGTTTGAGTCCCAATACTGTTCTTCCACCTCATCAATACTGTGTGAATGTGAAGAAGAGATCTAAAAAGGGAAAACCCACTGGGAAAGATGATTTTTTTACTCTCAAGGAGGGCTTTGCTGGGATCAAATTTGCTCGCTTCCGCAGTTCTTCATGTAAGAGCCATCTCTCTAGACCTCATGAATTGGAAGGTAATACAGAAACCAGGCGCAGTTCCATGTATCAGAGTTCAGAGGAAGTGAAAAGTATAAAAAAAATGGGCACCATGGTAGAGGGAAGGAGAAAAATAGAAATTTCAAGGAGGAGTGACACCTCTTTCGTAGGTAGCATTGTTGATTCTTTATGTGGTTCAGATGATGAAGGTTCTGGGCTGAGATCTTCAGAGATATCCAGGTCCAGGACTTGCAAGGCGCCAGACTCTCCAAATAGCTTTATTGAAATCTGTATAAATTCAGATGTTAAAAATAAGAACTCTGCCACAGTACAAGGGAGAGAATCTATAAATTTGAAGTCCAGAAGTGACAAAGTTTCTGATTCTGTAATCAATGGCAATTATCATGTTGAAAAGGACATGGTCCACTGGCTGCAAAAGTCACTCTCAGCTAAGGCAGGGATCTCTCACATGCCATCTCCATTAGGAAGTGATTGCTCATCAAGATCAAGTCCAAAAGTCCAAGTCACCCATTGCAGGAAAAGGTTGAATCATTTCACAAAGTCAAAATCATTGAGAAGTCCAGTGAGTAAGATACTGGAAAATAGTGAGATCAAATCAAATGGCATAGCAAACATTGCAAGACATAGGACTTATCAAAAATCATTGCTAAATGACTTATCCAACAAAGGAAAGCATTCTGACATTATTTCTGAATTTATCAGCAGAGAAATCCAGTATTCAGGTATAGCTTCTTCACCAGTTCATCTGCATGGCAATCTCAAAATGGAAAATAAACATGGAGTGCTGTTTTTTGAGTTCAAGGTGAAGTGCCCTGAAGATGTGTTTGTGGCCAAGACATGGAGAACAGGTAATGCTTTCAACTGGGTGTATACTTTTCACTCAATTGATAATAGAAAGAAGAGCAATGCCAATGGGTTGGGATCCCATGATTTTGACAAAGATTCCTCAATAGTAGCACAGATGCTAGTTTCCTGTAATTTAGGTTCTGAACTAGAAGACAAAGTATTTGACAACTTTATGGTGACAGAATTTGTGTTGTATGATTTTACACACTCAAGGCAGAGTGTTTCGCGTGAAAAAAAGTCTTTCTGTGAACTAGATGGTTCTAAAACTCCAAAAGCTTCCCATGTTGGATTGAAGGAGGAAACTTTGGGGCTGGATGGGAACCATGTGGTAAAAAATAAACTTCAAGACAAGCCTCTATCAAGCAGTGTTGAATTTGATGATTTAAATTCTTATCCTTACCTGTCCACTGAATGCTATCCAAACCTTGAAATTGCTGCCATTGTCTTGCAAATTCCGTTTTCTAAGAGAGAAAGCTTGAAGTACAAAAGAGGAGAAAGAAAAAGTGCTAAAGAATGTTCCAACAGAAGTGATCTCTCTGCAGTAAAAGATAGAAAAAGTCTTCATTATGACCAAATCCAGGAACAGGTAAAGGTGGTAATACCAACTGGCAATCATGGTTTGCCAAATGCTGAAAGCCAGGCTCCCTCGTCATTACTTGATCGACTGAGGCATGGTGGAGGTTGTGACTGTGGTGGCTGGGACATGGCCTGTCCCCTTATTCTTTTAGGCAATCCTACTATTCAATTTGCCGAAGACTGCTCACTCATGGAGGAACATCAACCATTGGAACTTTTTGTTCAGGGAGCAAAAGGAAGCAGTCCTACCTTCAGCATGACAAGAATTGAAGAGGGGCATTATGCTGTTGATTTTCATGCACAATTATCCACTTTACAAGCATTCTCCATCTGTGTTGCCATTTTGCATGGAACTTCTGCCTTCAGCAATGCAAGTCACCAGAAAAACCAACAGTTATCTCAGTGCAGTTCACTGAAAATGCTACTTGAGGAGGATGTTGATTTCTTTTTCAAATCAGTCACAACTGAGAAGGAGACTGGTTGCAAGAATCAGAAAGGAATTCCTCGATCCTATGTGCTGAACCCGCCTTTTTCTCCTATTGCACGCGTATAAAGTATAGACCTGACCAGCCCTGCTGTAGTGATTAAATGGAAAACACATCATCTATAGCATGTTTGGTTACACGTTGTTGACGTAGTTTCTGATGTTTCTACCGTGCCTCCAAACACACGACTAGTTTCTTATCTTTATACCACCTTTATGCCATTGCTGCTTGGAGAAAGACATTATGGTCTTGGAGATGGCCTGTGAAAATTGGTAACAAGTGTGCGGAGGATCTTAGTGAGGGTGGGGTTTGCAACTCTGCATCAATATATAGGTTTTGTTGCTAGACACAATGACCTGCTTGCAGAATCTGTTGAACACTCTGAGAAAGTGCAATGGGGTTGGTGATATATATCTGATAGGGATAGCACATTAGAGGTGTCAGAATCAGTCTTTGTATAAGTTCTTTTGTTCCAGTTAAGTAGGATAGAAACCGAAAATTGTCCATATTGTATGGGATAGTTAGAAGGGGGATACTTTACACCCAGTAGGAAATAGCATAACAATCCCTTCTCTTTTTTTTGTATCTATTAAGATTCTGAAATTATATAAATGATGGGAAGTGGATTGGAATAATTTCAAGAATTGTTAGTCTCTCTTCTTTGAGTATGGACCCAAGCTTTTGAAAATT

Coding sequences of Glyma05g37820

Limit To All Plant Sequences

>Glyma05g37820.2   sequence type=CDS   gene model=Glyma05g37820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACAAGAGTTGGAGCTGGATCTTGATGACAAGTCTTCAGTGGGTTTGAGTCCCAATACTGTTCTTCCACCTCATCAATACTGTGTGAATGTGAAGAAGAGATCTAAAAAGGGAAAACCCACTGGGAAAGATGATTTTTTTACTCTCAAGGAGGGCTTTGCTGGGATCAAATTTGCTCGCTTCCGCAGTTCTTCATGTAAGAGCCATCTCTCTAGACCTCATGAATTGGAAGGTAATACAGAAACCAGGCGCAGTTCCATGTATCAGAGTTCAGAGGAAGTGAAAAGTATAAAAAAAATGGGCACCATGGTAGAGGGAAGGAGAAAAATAGAAATTTCAAGGAGGAGTGACACCTCTTTCGTAGGTAGCATTGTTGATTCTTTATGTGGTTCAGATGATGAAGGTTCTGGGCTGAGATCTTCAGAGATATCCAGGTCCAGGACTTGCAAGGCGCCAGACTCTCCAAATAGCTTTATTGAAATCTGTATAAATTCAGATGTTAAAAATAAGAACTCTGCCACAGTACAAGGGAGAGAATCTATAAATTTGAAGTCCAGAAGTGACAAAGTTTCTGATTCTGTAATCAATGGCAATTATCATGTTGAAAAGGACATGGTCCACTGGCTGCAAAAGTCACTCTCAGCTAAGGCAGGGATCTCTCACATGCCATCTCCATTAGGAAGTGATTGCTCATCAAGATCAAGTCCAAAAGTCCAAGTCACCCATTGCAGGAAAAGGTTGAATCATTTCACAAAGTCAAAATCATTGAGAAGTCCAGTGAGTAAGATACTGGAAAATAGTGAGATCAAATCAAATGGCATAGCAAACATTGCAAGACATAGGACTTATCAAAAATCATTGCTAAATGACTTATCCAACAAAGGAAAGCATTCTGACATTATTTCTGAATTTATCAGCAGAGAAATCCAGTATTCAGGTATAGCTTCTTCACCAGTTCATCTGCATGGCAATCTCAAAATGGAAAATAAACATGGAGTGCTGTTTTTTGAGTTCAAGGTGAAGTGCCCTGAAGATGTGTTTGTGGCCAAGACATGGAGAACAGGTAATGCTTTCAACTGGGTGTATACTTTTCACTCAATTGATAATAGAAAGAAGAGCAATGCCAATGGGTTGGGATCCCATGATTTTGACAAAGATTCCTCAATAGTAGCACAGATGCTAGTTTCCTGTAATTTAGGTTCTGAACTAGAAGACAAAGTATTTGACAACTTTATGGTGACAGAATTTGTGTTGTATGATTTTACACACTCAAGGCAGAGTGTTTCGCGTGAAAAAAAGTCTTTCTGTGAACTAGATGGTTCTAAAACTCCAAAAGCTTCCCATGTTGGATTGAAGGAGGAAACTTTGGGGCTGGATGGGAACCATGTGGTAAAAAATAAACTTCAAGACAAGCCTCTATCAAGCAGTGTTGAATTTGATGATTTAAATTCTTATCCTTACCTGTCCACTGAATGCTATCCAAACCTTGAAATTGCTGCCATTGTCTTGCAAATTCCGTTTTCTAAGAGAGAAAGCTTGAAGTACAAAAGAGGAGAAAGAAAAAGTGCTAAAGAATGTTCCAACAGAAGTGATCTCTCTGCAGTAAAAGATAGAAAAAGTCTTCATTATGACCAAATCCAGGAACAGGTAAAGGTGGTAATACCAACTGGCAATCATGGTTTGCCAAATGCTGAAAGCCAGGCTCCCTCGTCATTACTTGATCGACTGAGGCATGGTGGAGGTTGTGACTGTGGTGGCTGGGACATGGCCTGTCCCCTTATTCTTTTAGGCAATCCTACTATTCAATTTGCCGAAGACTGCTCACTCATGGAGGAACATCAACCATTGGAACTTTTTGTTCAGGGAGCAAAAGGAAGCAGTCCTACCTTCAGCATGACAAGAATTGAAGAGGGGCATTATGCTGTTGATTTTCATGCACAATTATCCACTTTACAAGCATTCTCCATCTGTGTTGCCATTTTGCATGGAACTTCTGCCTTCAGCAATGCAAGTCACCAGAAAAACCAACAGTTATCTCAGTGCAGTTCACTGAAAATGCTACTTGAGGAGGATGTTGATTTCTTTTTCAAATCAGTCACAACTGAGAAGGAGACTGGTTGCAAGAATCAGAAAGGAATTCCTCGATCCTATGTGCTGAACCCGCCTTTTTCTCCTATTGCACGCGTATAA

>Glyma05g37820.3   sequence type=CDS   gene model=Glyma05g37820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACAAGAGTTGGAGCTGGATCTTGATGACAAGTCTTCAGTGGGTTTGAGTCCCAATACTGTTCTTCCACCTCATCAATACTGTGTGAATGTGAAGAAGAGATCTAAAAAGGGAAAACCCACTGGGAAAGATGATTTTTTTACTCTCAAGGAGGGCTTTGCTGGGATCAAATTTGCTCGCTTCCGCAGTTCTTCATGTAAGAGCCATCTCTCTAGACCTCATGAATTGGAAGGTAATACAGAAACCAGGCGCAGTTCCATGTATCAGAGTTCAGAGGAAGTGAAAAGTATAAAAAAAATGGGCACCATGGTAGAGGGAAGGAGAAAAATAGAAATTTCAAGGAGGAGTGACACCTCTTTCGTAGGTAGCATTGTTGATTCTTTATGTGGTTCAGATGATGAAGGTTCTGGGCTGAGATCTTCAGAGATATCCAGGTCCAGGACTTGCAAGGCGCCAGACTCTCCAAATAGCTTTATTGAAATCTGTATAAATTCAGATGTTAAAAATAAGAACTCTGCCACAGTACAAGGGAGAGAATCTATAAATTTGAAGTCCAGAAGTGACAAAGTTTCTGATTCTGTAATCAATGGCAATTATCATGTTGAAAAGGACATGGTCCACTGGCTGCAAAAGTCACTCTCAGCTAAGGCAGGGATCTCTCACATGCCATCTCCATTAGGAAGTGATTGCTCATCAAGATCAAGTCCAAAAGTCCAAGTCACCCATTGCAGGAAAAGGTTGAATCATTTCACAAAGTCAAAATCATTGAGAAGTCCAGTGAGTAAGATACTGGAAAATAGTGAGATCAAATCAAATGGCATAGCAAACATTGCAAGACATAGGACTTATCAAAAATCATTGCTAAATGACTTATCCAACAAAGGAAAGCATTCTGACATTATTTCTGAATTTATCAGCAGAGAAATCCAGTATTCAGGTATAGCTTCTTCACCAGTTCATCTGCATGGCAATCTCAAAATGGAAAATAAACATGGAGTGCTGTTTTTTGAGTTCAAGGTGAAGTGCCCTGAAGATGTGTTTGTGGCCAAGACATGGAGAACAGGTAATGCTTTCAACTGGGTGTATACTTTTCACTCAATTGATAATAGAAAGAAGAGCAATGCCAATGGGTTGGGATCCCATGATTTTGACAAAGATTCCTCAATAGTAGCACAGATGCTAGTTTCCTGTAATTTAGGTTCTGAACTAGAAGACAAAGTATTTGACAACTTTATGGTGACAGAATTTGTGTTGTATGATTTTACACACTCAAGGCAGAGTGTTTCGCGTGAAAAAAAGTCTTTCTGTGAACTAGATGGTTCTAAAACTCCAAAAGCTTCCCATGTTGGATTGAAGGAGGAAACTTTGGGGCTGGATGGGAACCATGTGGTAAAAAATAAACTTCAAGACAAGCCTCTATCAAGCAGTGTTGAATTTGATGATTTAAATTCTTATCCTTACCTGTCCACTGAATGCTATCCAAACCTTGAAATTGCTGCCATTGTCTTGCAAATTCCGTTTTCTAAGAGAGAAAGCTTGAAGTACAAAAGAGGAGAAAGAAAAAGTGCTAAAGAATGTTCCAACAGAAGTGATCTCTCTGCAGTAAAAGATAGAAAAAGTCTTCATTATGACCAAATCCAGGAACAGGTAAAGGTGGTAATACCAACTGGCAATCATGGTTTGCCAAATGCTGAAAGCCAGGCTCCCTCGTCATTACTTGATCGACTGAGGCATGGTGGAGGTTGTGACTGTGGTGGCTGGGACATGGCCTGTCCCCTTATTCTTTTAGGCAATCCTACTATTCAATTTGCCGAAGACTGCTCACTCATGGAGGAACATCAACCATTGGAACTTTTTGTTCAGGGAGCAAAAGGAAGCAGTCCTACCTTCAGCATGACAAGAATTGAAGAGGGGCATTATGCTGTTGATTTTCATGCACAATTATCCACTTTACAAGCATTCTCCATCTGTGTTGCCATTTTGCATGGAACTTCTGCCTTCAGCAATGCAAGTCACCAGAAAAACCAACAGTTATCTCAGTGCAGTTCACTGAAAATGCTACTTGAGGAGGATGTTGATTTCTTTTTCAAATCAGTCACAACTGAGAAGGAGACTGGTTGCAAGAATCAGAAAGGAATTCCTCGATCCTATGTGCTGAACCCGCCTTTTTCTCCTATTGCACGCGTATAA

Predicted protein sequences of Glyma05g37820

Limit To All Plant Sequences

>Glyma05g37820.2   sequence type=predicted peptide   gene model=Glyma05g37820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQELELDLDDKSSVGLSPNTVLPPHQYCVNVKKRSKKGKPTGKDDFFTLKEGFAGIKFARFRSSSCKSHLSRPHELEGNTETRRSSMYQSSEEVKSIKKMGTMVEGRRKIEISRRSDTSFVGSIVDSLCGSDDEGSGLRSSEISRSRTCKAPDSPNSFIEICINSDVKNKNSATVQGRESINLKSRSDKVSDSVINGNYHVEKDMVHWLQKSLSAKAGISHMPSPLGSDCSSRSSPKVQVTHCRKRLNHFTKSKSLRSPVSKILENSEIKSNGIANIARHRTYQKSLLNDLSNKGKHSDIISEFISREIQYSGIASSPVHLHGNLKMENKHGVLFFEFKVKCPEDVFVAKTWRTGNAFNWVYTFHSIDNRKKSNANGLGSHDFDKDSSIVAQMLVSCNLGSELEDKVFDNFMVTEFVLYDFTHSRQSVSREKKSFCELDGSKTPKASHVGLKEETLGLDGNHVVKNKLQDKPLSSSVEFDDLNSYPYLSTECYPNLEIAAIVLQIPFSKRESLKYKRGERKSAKECSNRSDLSAVKDRKSLHYDQIQEQVKVVIPTGNHGLPNAESQAPSSLLDRLRHGGGCDCGGWDMACPLILLGNPTIQFAEDCSLMEEHQPLELFVQGAKGSSPTFSMTRIEEGHYAVDFHAQLSTLQAFSICVAILHGTSAFSNASHQKNQQLSQCSSLKMLLEEDVDFFFKSVTTEKETGCKNQKGIPRSYVLNPPFSPIARV*

>Glyma05g37820.3   sequence type=predicted peptide   gene model=Glyma05g37820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQELELDLDDKSSVGLSPNTVLPPHQYCVNVKKRSKKGKPTGKDDFFTLKEGFAGIKFARFRSSSCKSHLSRPHELEGNTETRRSSMYQSSEEVKSIKKMGTMVEGRRKIEISRRSDTSFVGSIVDSLCGSDDEGSGLRSSEISRSRTCKAPDSPNSFIEICINSDVKNKNSATVQGRESINLKSRSDKVSDSVINGNYHVEKDMVHWLQKSLSAKAGISHMPSPLGSDCSSRSSPKVQVTHCRKRLNHFTKSKSLRSPVSKILENSEIKSNGIANIARHRTYQKSLLNDLSNKGKHSDIISEFISREIQYSGIASSPVHLHGNLKMENKHGVLFFEFKVKCPEDVFVAKTWRTGNAFNWVYTFHSIDNRKKSNANGLGSHDFDKDSSIVAQMLVSCNLGSELEDKVFDNFMVTEFVLYDFTHSRQSVSREKKSFCELDGSKTPKASHVGLKEETLGLDGNHVVKNKLQDKPLSSSVEFDDLNSYPYLSTECYPNLEIAAIVLQIPFSKRESLKYKRGERKSAKECSNRSDLSAVKDRKSLHYDQIQEQVKVVIPTGNHGLPNAESQAPSSLLDRLRHGGGCDCGGWDMACPLILLGNPTIQFAEDCSLMEEHQPLELFVQGAKGSSPTFSMTRIEEGHYAVDFHAQLSTLQAFSICVAILHGTSAFSNASHQKNQQLSQCSSLKMLLEEDVDFFFKSVTTEKETGCKNQKGIPRSYVLNPPFSPIARV*

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