SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63660 | AT | Annotation by Michelle Graham. TAIR10: GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative | chr1:23604127-23607080 REVERSE LENGTH=534 | SoyBase | E_val: 0 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006164 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0006177 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GMP biosynthetic process | SoyBase | N/A | ISS |
| GO:0006529 | GO-bp | Annotation by Michelle Graham. GO Biological Process: asparagine biosynthetic process | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009113 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleobase biosynthetic process | SoyBase | N/A | ISS |
| GO:0009117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003922 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GMP synthase (glutamine-hydrolyzing) activity | SoyBase | N/A | ISS |
| GO:0004066 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1622 | KOG | GMP synthase | JGI | ISS | |
| PTHR11922 | Panther | GMP SYNTHASE-RELATED | JGI | ISS | |
| PTHR11922:SF2 | Panther | GMP SYNTHASE | JGI | ISS | |
| PF00117 | PFAM | Glutamine amidotransferase class-I | JGI | ISS | |
| PF00733 | PFAM | Asparagine synthase | JGI | ISS | |
| PF00958 | PFAM | GMP synthase C terminal domain | JGI | ISS | |
| UniRef100_B9SBB6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GMP synthase, putative n=1 Tax=Ricinus communis RepID=B9SBB6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K6H8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6H8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g37760 not represented in the dataset |
Glyma05g37760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g01820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g208400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g37760.1 sequence type=CDS gene model=Glyma05g37760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACCCCAAAAACGTGAAATCGGACCTGGTTCTCATTCTCGACTACGGTTCCCAATACACCCACCTCATCACTCGCCGCATCCGTAGCCTCTCCGTCTTCTCCCTCTGCATCTCCGGCACCTCCTCTCTCTCCACCATCGCCGACCTCAACCCCTCCGTCGTCATTCTCTCCGGCGGGCCCCACTCCGTCCACACCCCCGACTCCCCCTCCTTCCCCGACGGCTTCCTCCAGTGGGCCCAGTCCAATGGCGTCACCGTCCTCGGCATCTGCTACGGCCTCCAGCTCCTCGTCCAGCGCCTAGGCGGCGACGTCCGCGTCGGAGACAAGCAGGAGTATGGCCGCATGGAAATCTGTGCCGATAAACCCTCCGCGCTCTTTGGCCCTGAGAAAGTCGGTAAACGACAGGTCGTTTGGATGAGCCATGGCGACGAGGCCGTCGCGCTGCCCGATGGATTCCACGTCGTCGCCCGCAGCGACCAGGGCGCTGTTGCCGCTATTGAAAACCCCCCCGCCAAGCTCTACGGCCTCCAGTATCACCCTGAGGTGACCCATACGGAGGATGGAATGGAGACATTGCGGCGTTTTCTGTTTGATGTTTGTGGTGTGGGAGCAGGGTGGAAGATGGAGGATGTGATGGAGGAGGAGATAAAGGTGATTAAAGAAACGGTGGGGCCTGATGAGCATGTGATTTGTGCTTTGTCTGGTGGTGTGGATTCCACTGTTGCTGCTACTCTGGTGCATAAGGCTATTGGGGATAGGCTTCATTGTGTGTTTGTGGATAATGGGTTGCTTAGGTATAAGGAGAGGGAGCGTGTGATGGAGACTTTTGAGAAGGATCTTCATTTGCCGGTTGTGTGTGTTGATGCCGTAAATCAGTTTCTTACGAAGTTGAAAGGTGTGGTGGATCCAGAGACCAAGAGGAAGATTATTGGGAAGGAGTTTATTTGTATTTTTGATGCTTTTGCTCAGGAGCTTGAGGGGAAGCTGGGGAAGAAGCCTTCTTATTTGGTTCAGGGGACGTTGTATCCTGATGTGATTGAATCTTGTCCTCCACCTGGGACCGGGAGAACCCATTCCCATACCATTAAGAGTCATCATAACGTTGGAGGCCTTCCAAAAGATATGAAGTTGAAGCTTATTGAACCACTTAAGCTTCTGTTCAAGGATGAGGTTCGTCAATTAGGGAGGATCTTGGATGTTCCTGTGGCCTTTCTAAGACGTCACCCATTCCCAGGGCCTGGTCTTGCAGTGAGAGTCTTGGGTGATGTGACTGAAGGAAATGCTTTAGATATTCTCCGACAGGTTGATGAGATCTTCATTCAGTCAATCAAGGATGCTGGGCTCTATGATTCAATATGGCAAGCTTTTGCAGTTTTCTTGCCTGTTCGATCGGTTGGAGTTCAAGGTGATCAAAGAACACACTCCCATGTTGTTGCTCTCAGAGCTGTTACAAGTCAAGATGGAATGACTGCTGACTGGTACTACTTTGAGCACAAGTTCCTTGACGATGTTTCCCGAAAGATCTGTAATGGTGTCCGTGGTGTAAACCGTGTTGTGCAAGATATTACCTCAAAGCCACCATCAACAATTGAATGGGAATAA
>Glyma05g37760.1 sequence type=predicted peptide gene model=Glyma05g37760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPKNVKSDLVLILDYGSQYTHLITRRIRSLSVFSLCISGTSSLSTIADLNPSVVILSGGPHSVHTPDSPSFPDGFLQWAQSNGVTVLGICYGLQLLVQRLGGDVRVGDKQEYGRMEICADKPSALFGPEKVGKRQVVWMSHGDEAVALPDGFHVVARSDQGAVAAIENPPAKLYGLQYHPEVTHTEDGMETLRRFLFDVCGVGAGWKMEDVMEEEIKVIKETVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMETFEKDLHLPVVCVDAVNQFLTKLKGVVDPETKRKIIGKEFICIFDAFAQELEGKLGKKPSYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILDVPVAFLRRHPFPGPGLAVRVLGDVTEGNALDILRQVDEIFIQSIKDAGLYDSIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVSRKICNGVRGVNRVVQDITSKPPSTIEWE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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