SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G23470 | AT | Annotation by Michelle Graham. TAIR10: PLAC8 family protein | chr4:12249289-12251079 FORWARD LENGTH=255 | SoyBase | E_val: 2.00E-129 | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PF04749 | PFAM | PLAC8 family | JGI | ISS | |
| UniRef100_I1K6G0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6G0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q67YE3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MRNA, , clone: RAFL25-03-N20 n=1 Tax=Arabidopsis thaliana RepID=Q67YE3_ARATH | SoyBase | E_val: 8.00E-127 | ISS |
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Glyma05g37590 not represented in the dataset |
Glyma05g37590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g01990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g209900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g37590.1 sequence type=CDS gene model=Glyma05g37590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGCAGGAGAGTATCGAAAAGATGCTGTCACGGCAGAATTACCGGAATTTATGGCACACCGATCTCTTGAGATCCATTCAGGCCGATACACCTTATTGTTGCCTCGCGTTGTGGTGTGCGCCATGTGTGTCTTACCTTCTTCGCAAAAGAGCCCTTTATGATGATATGTCAAGATACACATGTTGTGCTGGCTACATGCCTTGCAGTGGTAGGTGTGGAGAAAGTAAATGTCCAGAATTTTGCCTTTGCACTGAGGTTTTCCTCTGCTTTGGAAATTCAGTCGCCTCAACCCGCTTTCTATTGCAAGATGAATTTAACATTCAAACCACGCAATGTGATAATTGCATTATTGGTTTCATGTTTTGCCTTCAACAAATTGCATGTATATTCTCTATTGTTGCCATGATTGTGGGAAGCAGTGAAATTCAAGAGGCTTCTCAGCTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACGGTCTGTGCATGCATGCAGACTCAGCACAAGATTGAGATGGACAAGCGTGACGGGAAATTTGGACCCCAACCAGCAATGGCAGTGCCTCCTGTTCAGCAGATGTCACGCATTGATCAACAAGTTCCTCCTTTTGTTGGGTTTCCACCACAACCAGTTTATGGACAGCCTGCTCAAGGATATCCCCCCGCCGGTTACCACCCCCCTGCTACATATCCTCCACCAGAATATCCCCCCGCCGGTTACCCCCCCCCTGTTGTATATCCTCCACCAGGATATTCTGGCCACCCTAAGTGA
>Glyma05g37590.1 sequence type=predicted peptide gene model=Glyma05g37590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASQESIEKMLSRQNYRNLWHTDLLRSIQADTPYCCLALWCAPCVSYLLRKRALYDDMSRYTCCAGYMPCSGRCGESKCPEFCLCTEVFLCFGNSVASTRFLLQDEFNIQTTQCDNCIIGFMFCLQQIACIFSIVAMIVGSSEIQEASQLLSCLADFVYCTVCACMQTQHKIEMDKRDGKFGPQPAMAVPPVQQMSRIDQQVPPFVGFPPQPVYGQPAQGYPPAGYHPPATYPPPEYPPAGYPPPVVYPPPGYSGHPK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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