SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63940 | AT | Annotation by Michelle Graham. TAIR10: monodehydroascorbate reductase 6 | chr1:23730206-23733534 FORWARD LENGTH=486 | SoyBase | E_val: 0 | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0010319 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: stromule | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG1336 | KOG | Monodehydroascorbate/ferredoxin reductase | JGI | ISS | |
| PTHR22912 | Panther | DISULFIDE OXIDOREDUCTASE | JGI | ISS | |
| PTHR22912:SF37 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00070 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| PF07992 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| UniRef100_D9IZZ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Monodehydroascorbate reductase n=2 Tax=Solanum lycopersicum RepID=D9IZZ1_SOLLC | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339835 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339835 related cluster n=1 Tax=unknown RepID=UPI0002339835 | SoyBase | E_val: 0 | ISS |
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Glyma05g37430 not represented in the dataset |
Glyma05g37430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g02100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g211500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g37430.3 sequence type=transcript gene model=Glyma05g37430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTACGTGATGCTGCGCGCACTTTCGTTGAGCATGGAATGGCCGATGGTCGTCTCTGTATTGTAACCAAAGAGCCTTATGCACCTTACGAGCGTCCCGCTCTGACGAGAGCGTATTTGTTCCCGCCGGATAAGAAACCAGCACGCCTTCCCGGTTTTCACACTTGTGTTGGATCCGGTGGAGAGAGGCAGACTCCGGAGTGGTATAAAGAGAATGTGATAGAGATGTTGTATGAAGATCCAGTAAAAGATATTGATATTGAAAAGCATACATTGACAACAAGTTCTGGAAAACTTCTGAAGTATGGTTCGCTTATTATTGCTACAGGATGCACGGCATCAAGGTTTCCAGAGAAGATTGGGGGAAACCTACCTGGTGTTCACTATATTCGGCATGTTGCAGATGCTGATACACTAATTTTATCATTGGAAAAAGCAAAAAAGGTTGTAGTTGTCAGAGGTGGTTATATAGGAATGGAGGTTGCTGCTGCAGCTGTTGGTTGGAAACTTGATGCAACAATCATATTTCCAGAAGATGACCTTTTGCAAAGACTGTTTACTCCTTCTCTTGCTCGGAGATATGAAGAACTCTATCAAAAGAATGGAGTCAAAGTCTTGAAGGGTGCCTCCATAAAAAATTTGTAAGCTGGTTCTAATGGACATGTAGCTGCTGTGAAACTTGGAGATGGATCTATTTTGGAGGCGGATACGGTAATTATAGGCATTGGAGCAAGACCTGCTGTAAGCCCCTTTGAGAGGGTGGGCCAGAATACAGATGTTGGTGGTATACAGG
>Glyma05g37430.2 sequence type=CDS gene model=Glyma05g37430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCAGCCTTATGCACCTTACGAGCGTCCCGCTCTGACGAGAGCGTATTTGTTCCCGCCGGATAAGAAACCAGCACGCCTTCCCGGTTTTCACACTTGTGTTGGATCCGGTGGAGAGAGGCAGACTCCGGAGTGGTATAAAGAGAATGTGATAGAGATGTTGTATGAAGATCCAGTAAAAGATATTGATATTGAAAAGCATACATTGACAACAAGTTCTGGAAAACTTCTGAAGTATGGTTCGCTTATTATTGCTACAGGATGCACGGCATCAAGGTTTCCAGAGAAGATTGGGGGAAACCTACCTGGTGTTCACTATATTCGGCATGTTGCAGATGCTGATACACTAATTTTATCATTGGAAAAAGCAAAAAAGGTTGTAGTTGTCAGAGGTGGTTATATAGGAATGGAGGTTGCTGCTGCAGCTGTTGGTTGGAAACTTGATGCAACAATCATATTTCCAGAAGATGACCTTTTGCAAAGACTGTTTACTCCTTCTCTTGCTCGGAGATATGAAGAACTCTATCAAAAGAATGGAGTCAAAGTCTTGAAGGTAATTATAGGCATTGGAGCAAGACCTGCTGTAAGCCCCTTTGAGAGGGTGGGCCAGAATACAGATGTTGGTGGTATACAGGTTGATGGTCAGTTCCGGACAAGCACTCCTGGAATCTTTGCTGTTGGTGATGTAGCAGCTTTTCCTTTGAAGATCTATAACCGTATCTCTCGAGTTGAGCATGTAGATCATGCCCGTCGCTCTGCACAGCACTGTGTGAAAGCATTACTCAGTGCACAAACTCACACGTATGACTATCTTCCATACTTCTATTCAAGGATTTTTGAATATGAAGGAAGCCCTAGAAAAGTGTGGTGGCAGTTCTTTAGAGACAAGGTTGGAGAAACAGTTGAAATTGGAAATTTTGATCCTAAAATAGCTACCTTCTGGATTGAATCTGGTAAGCTGAAAGGAGTTCTTCTTGAAAGTGGGAGCCCTGAGGAATTTCAACTCCTGCCTAAACTTGCCAGAAGTCAGCCTCTGATTGATAAAGCAAAACTTCAAAATGCAACTTCAGTAGAGGAGGCCCTAGAGATTGCTCGAGGATCCTTGCAAGGCGAAGCTGTTGTCTAG >Glyma05g37430.3 sequence type=CDS gene model=Glyma05g37430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGATGGTCGTCTCTGTATTGTAACCAAAGAGCCTTATGCACCTTACGAGCGTCCCGCTCTGACGAGAGCGTATTTGTTCCCGCCGGATAAGAAACCAGCACGCCTTCCCGGTTTTCACACTTGTGTTGGATCCGGTGGAGAGAGGCAGACTCCGGAGTGGTATAAAGAGAATGTGATAGAGATGTTGTATGAAGATCCAGTAAAAGATATTGATATTGAAAAGCATACATTGACAACAAGTTCTGGAAAACTTCTGAAGTATGGTTCGCTTATTATTGCTACAGGATGCACGGCATCAAGGTTTCCAGAGAAGATTGGGGGAAACCTACCTGGTGTTCACTATATTCGGCATGTTGCAGATGCTGATACACTAATTTTATCATTGGAAAAAGCAAAAAAGGTTGTAGTTGTCAGAGGTGGTTATATAGGAATGGAGGTTGCTGCTGCAGCTGTTGGTTGGAAACTTGATGCAACAATCATATTTCCAGAAGATGACCTTTTGCAAAGACTGTTTACTCCTTCTCTTGCTCGGAGATATGAAGAACTCTATCAAAAGAATGGAGTCAAAGTCTTGAAGGGTGCCTCCATAAAAAATTTGTAA
>Glyma05g37430.2 sequence type=predicted peptide gene model=Glyma05g37430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNQPYAPYERPALTRAYLFPPDKKPARLPGFHTCVGSGGERQTPEWYKENVIEMLYEDPVKDIDIEKHTLTTSSGKLLKYGSLIIATGCTASRFPEKIGGNLPGVHYIRHVADADTLILSLEKAKKVVVVRGGYIGMEVAAAAVGWKLDATIIFPEDDLLQRLFTPSLARRYEELYQKNGVKVLKVIIGIGARPAVSPFERVGQNTDVGGIQVDGQFRTSTPGIFAVGDVAAFPLKIYNRISRVEHVDHARRSAQHCVKALLSAQTHTYDYLPYFYSRIFEYEGSPRKVWWQFFRDKVGETVEIGNFDPKIATFWIESGKLKGVLLESGSPEEFQLLPKLARSQPLIDKAKLQNATSVEEALEIARGSLQGEAVV* >Glyma05g37430.3 sequence type=predicted peptide gene model=Glyma05g37430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADGRLCIVTKEPYAPYERPALTRAYLFPPDKKPARLPGFHTCVGSGGERQTPEWYKENVIEMLYEDPVKDIDIEKHTLTTSSGKLLKYGSLIIATGCTASRFPEKIGGNLPGVHYIRHVADADTLILSLEKAKKVVVVRGGYIGMEVAAAAVGWKLDATIIFPEDDLLQRLFTPSLARRYEELYQKNGVKVLKGASIKNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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