Glyma05g37410 - SoyBase

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Report for Sequence Feature Glyma05g37410

Feature Type:	gene_model
Chromosome:	Gm05
Start:	41020418
stop:	41023420
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g37410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61510	AT	Annotation by Michelle Graham. TAIR10: ACC synthase 1 \| chr3:22763495-22765730 REVERSE LENGTH=488	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0042218	GO-bp	Annotation by Michelle Graham. GO Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016847	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG0256	KOG	1-aminocyclopropane-1-carboxylate synthase, and related proteins	JGI		ISS
PTHR11751	Panther	SUBGROUP I AMINOTRANSFERASE RELATED	JGI		ISS
PTHR11751:SF26	Panther	TRANSCRIPTION REGULATOR AMINOTRANSFERASE GNTR-RELATED	JGI		ISS
PF00155	PFAM	Aminotransferase class I and II	JGI		ISS
UniRef100_P31531	UniRef	Annotation by Michelle Graham. Best UniRef hit: 1-aminocyclopropane-1-carboxylate synthase n=3 Tax=Glycine max RepID=1A1C_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P31531	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate synthase n=3 Tax=Glycine max RepID=1A1C_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g37410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g37410

Paralog	Evidence	Comments
Glyma08g02130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g37410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g211700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g37410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g37410

Limit To All Plant Sequences

>Glyma05g37410.2   sequence type=CDS   gene model=Glyma05g37410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGATGGATGTGGACCAAACTCAATTGTTGTCTAAGATGGTCATCGGAGATGGACATGGTGAAGCATCACCATACTTTGATGGATGGAAGGCTTATGATGAAAACCCCTTTCATCCCAAAGAGAATCCTAACGGGGTTATCCAAATGGGTCTTGCTGAGAATCAGCTTACTTCTGATTTGGTTGAAGATTGGATACTGAATAACCCAGAGGCCTCCATTTGCACACCAGAAGGAATAAATGATTTCAGGGCCATAGCTAACTTTCAGGATTATCATGGTCTGCCCGAGTTCAGAAATGCTGTGGCTAAATTCATGGGTAGAACAAGAGGAAACAGAGTCACGTTTGATCCTGACCGTATTGTCATGAGCGGTGGAGCAACTGGAGCACACGAAGTCACTACCTTTTGTTTGGCAGACCCTGGTGACGCATTTTTGGTGCCCATTCCTTATTATCCAGGTTTTGACCGGGATTTGAGGTGGAGAACAGGAATTAAACTTGTTCCAGTTATGTGCGATAGCTCAAACAATTTCAAGTTGACAAAGCAAGCATTGGAAGATGCGTATGAGAAGGCCAAAGAGGATAATATAAGAGTAAAGGGCTTGCTCATCACCAATCCATCAAACCCATTAGGCACAGTCATGGACAGAAACACACTAAGAACCGTGATGAGCTTCATCAACGAGAAGCGTATCCACCTTGTATCTGATGAAATATACTCTGCAACAGTTTTTAGCCACCCCAGTTTCATAAGCATTGCTGAGATATTAGAGGAAGACACAGACATCGAATGTGACCGCAACCTCGTTCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGCTTCAGAGTTGGCATCATATACTCTTACAATGATGCTGTGGTCCATTGTGCACGCAAAATGTCAAGCTTTGGATTGGTGTCAACACAGACTCAGTATCTTTTAGCATCAATGCTAAATGATGATGAGTTTGTGGAAAGTTTTCTGGTAGAGAGTGCAAAAAGGCTGGCACAAAGGCATAGAGTTTTCACTGGGGGGTTGGCCAAAGTTGGCATAAAGTGCTTGCAAAGCAATGCTGGTCTCTTTGTGTGGATGGATTTAAGGCAACTTCTCAAGAAGCCAACGCTTGACTCTGAAATGGAGCTTTGGAGAGTGATCATTGATGAGGTTAAGATCAATGTTTCACCTGGCTCCTCTTTCCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCTATGCCAACATGGATGATATGGCTGTGCAAATTGCATTGCAAAGAATTCGTAACTTTGTGCTTCAAAACAAGGAGATCATGGTGCCTAACAAGAAACATTGTTGGCACAGTAACTTGAGGTTGAGCCTCAAAACCAGAAGGTTTGATGATATCATGATGTCACCTCACTCCCCCATACCTCAGTCACCTCTGGTTAAAGCCACAATTTGA

Predicted protein sequences of Glyma05g37410

Limit To All Plant Sequences

>Glyma05g37410.2   sequence type=predicted peptide   gene model=Glyma05g37410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLMDVDQTQLLSKMVIGDGHGEASPYFDGWKAYDENPFHPKENPNGVIQMGLAENQLTSDLVEDWILNNPEASICTPEGINDFRAIANFQDYHGLPEFRNAVAKFMGRTRGNRVTFDPDRIVMSGGATGAHEVTTFCLADPGDAFLVPIPYYPGFDRDLRWRTGIKLVPVMCDSSNNFKLTKQALEDAYEKAKEDNIRVKGLLITNPSNPLGTVMDRNTLRTVMSFINEKRIHLVSDEIYSATVFSHPSFISIAEILEEDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVHCARKMSSFGLVSTQTQYLLASMLNDDEFVESFLVESAKRLAQRHRVFTGGLAKVGIKCLQSNAGLFVWMDLRQLLKKPTLDSEMELWRVIIDEVKINVSPGSSFHCTEPGWFRVCYANMDDMAVQIALQRIRNFVLQNKEIMVPNKKHCWHSNLRLSLKTRRFDDIMMSPHSPIPQSPLVKATI*

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