Report for Sequence Feature Glyma05g37390
Feature Type: gene_model
Chromosome: Gm05
Start: 40997091
stop: 40999588
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g37390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G23550 AT
Annotation by Michelle Graham. TAIR10: WRKY family transcription factor | chr4:12291831-12293088 FORWARD LENGTH=304
SoyBase E_val: 2.00E-50 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0010200 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to chitin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF03106 PFAM
WRKY DNA -binding domain
JGI ISS
UniRef100_B9RCH8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RCH8_RICCO
SoyBase E_val: 5.00E-54 ISS
UniRef100_I1KPF5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KPF5_SOYBN
SoyBase E_val: 2.00E-171 ISS
Proteins Associated with Glyma05g37390
Locus Gene Symbol Protein Name
WRKY94 WRKY Transcription Factor
Expression Patterns of Glyma05g37390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g37390
Paralog Evidence Comments
Glyma08g02160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g37390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g211900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g37390
Coding sequences of Glyma05g37390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g37390.2 sequence type=CDS gene model=Glyma05g37390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGAATTTGCGTGCTTGAGAGATTGGGATTTGGAAGCTATTGTGAGAGGAAACACCGGTGAAGCCACCACCATGGATGACCCAAATCCTGATTTTTCTTATTTCTTCTCTGAACAAGATGAGCTGCTTGATAGCTTTCCCGAATTCTCAGAAACCACGAGAGTCCTTGATGATTTGGAAGACCTTTACAAACCTTTCTACCCAGTTTTTCACCCTCTTTCACCGCACACCATCGTTACAACTTCCCCACCTATCCCCATAGAGCCTGAACAAGTGATCAAAGCATCAGAAGAGAAAGTAGCTCTACAAGGATTGAAAGTCACCGCAGCACCTAAATGTAAAAAAAGCAAGAAGAGCCAGAACAAGAGTGTGGTGAAGCAGGTGACAACAGCAGAAGGTCTTGATGATGCATGGGCATGGCGAAAATATGGACAGAAACCAATAAAGGGTTCACCCTATCCTCGAAGCTATTATAGATGCAGCAGTTCCAAAGGGTGTTTGGCGAGGAAACAGGTTGAAAGGAGCCACTTAGATCCTGCGGTTTTTCTGGTAACCTACACTGCTGAACACAGCCATCCCCACCCAACTCGAAGAAACTCTCTTGCTGGGACCACTAGGAAGAACAATTCCCTTGTTCCTCCTCCAACAACCACTCGTCACCAAAAGAAGACTACTTGTTCCTCAAGCGTTCAACAAAGCATGGACTTGAAGAAAGAGGAAGATTTTCTTGACTGGTTGGAGGATGATAGTGCTCAATTTGGTGATGGTTGGATTCCAAGCTCGGATCTAGAGAAACTGATAGGACTTGAGTGCCAACATTTTGCATTAGATACCGGTTTCACGGATGATTTTCCACACCCTTAA
Predicted protein sequences of Glyma05g37390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g37390.2 sequence type=predicted peptide gene model=Glyma05g37390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDEFACLRDWDLEAIVRGNTGEATTMDDPNPDFSYFFSEQDELLDSFPEFSETTRVLDDLEDLYKPFYPVFHPLSPHTIVTTSPPIPIEPEQVIKASEEKVALQGLKVTAAPKCKKSKKSQNKSVVKQVTTAEGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAVFLVTYTAEHSHPHPTRRNSLAGTTRKNNSLVPPPTTTRHQKKTTCSSSVQQSMDLKKEEDFLDWLEDDSAQFGDGWIPSSDLEKLIGLECQHFALDTGFTDDFPHP*