Report for Sequence Feature Glyma05g37320
Feature Type: gene_model
Chromosome: Gm05
Start: 40925525
stop: 40926652
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g37320
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G46150 AT
Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:18961424-18962089 FORWARD LENGTH=221
SoyBase E_val: 8.00E-38 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF03168 PFAM
Late embryogenesis abundant protein
JGI ISS
UniRef100_I1K6D1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6D1_SOYBN
SoyBase E_val: 1.00E-160 ISS
UniRef100_Q19QU4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Plant cell wall protein SlTFR88 n=1 Tax=Solanum lycopersicum RepID=Q19QU4_SOLLC
SoyBase E_val: 5.00E-36 ISS
Expression Patterns of Glyma05g37320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g37320
Paralog Evidence Comments
Glyma08g02220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g37320 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g212600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g37320
Coding sequences of Glyma05g37320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g37320.1 sequence type=CDS gene model=Glyma05g37320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCAGAGCCCTGATCAGCAGATGAAGCCCTTAGCTCCATTCATATCATCAACCCAGTTCAGCAGACAAGAAGATCAGTTTCAAGAGAGAACATCCGAACAGAAAATCATTCGCATAAGAAAGTTCGTGCTGTGCTGCGGTTGTTTCACTGCCCTTGTTGTGATACTCGTGGTCATACTGATAGTCTTGAGCTTCACCGTTTACAATGTCAAAGAACCCGAGGTGAGGATGAATTCGGTTACCCTTCTCAGTGGAACTTTTGCAAACGGTGGTGCCACTAACAACGTTACACTTGTTGCTGATATCTTTGTCAAGAACACAAACGCTTTTACCCTGAGGTTTGGAAGCACCAGCACCATTGTTTACTATGATGGTGTGAGAATAGGTGAGGGTACTTCTCCACCGGGTAAGGCCAAGGCAAGAAGGACCATAAGGGTAAACTCGACCTTGGAGATTATGTCAAAGAAGCTTTTGGAAATCCCAACTTTGAATATTGACCTCAGGGATCAGTTTTTGAATATCAGCAGCTATACAAGGATAGATGGTAAGGTGAAAATACTCAACATATTTCCGAGGAAGGTTGTGGTTGAGATGAATTGTACCATTGGATACAACATCACCACTGGGTCGGTCACAAATGGTGATAATTGTCTTGGAGCCGTTGATATTTAG
Predicted protein sequences of Glyma05g37320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g37320.1 sequence type=predicted peptide gene model=Glyma05g37320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAQSPDQQMKPLAPFISSTQFSRQEDQFQERTSEQKIIRIRKFVLCCGCFTALVVILVVILIVLSFTVYNVKEPEVRMNSVTLLSGTFANGGATNNVTLVADIFVKNTNAFTLRFGSTSTIVYYDGVRIGEGTSPPGKAKARRTIRVNSTLEIMSKKLLEIPTLNIDLRDQFLNISSYTRIDGKVKILNIFPRKVVVEMNCTIGYNITTGSVTNGDNCLGAVDI*