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Report for Sequence Feature Glyma05g37120

Feature Type:gene_model
Chromosome:Gm05
Start:40783444
stop:40785356
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g37120
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G23750AT Annotation by Michelle Graham. TAIR10: cytokinin response factor 2 | chr4:12376751-12377782 FORWARD LENGTH=343 SoyBaseE_val: 2.00E-53ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0042991GO-bp Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_B9RCN4UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RCN4_RICCO SoyBaseE_val: 8.00E-62ISS
UniRef100_I1K6B5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6B5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g37120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g37120
ParalogEvidenceComments
Glyma08g02460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g37120 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g214400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g37120
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g37120
>Glyma05g37120.1   sequence type=CDS   gene model=Glyma05g37120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATCTTCCATAAAAAACACACACCACCTTAACCGCACAAAACTCTTCATGGAAGAAGATACCCTTTTGAAGAAGAAGCGTCACTACCCCAAACTCATACGAATACGTGTCACCGACGCCGACGCTACTGACTCTTCCAGCGACGACGACGAGCCCTCGGTGTCCTCCACGCGCCGCCGAGTCAAATACTTCGTCAACGAGATTACCATCCAAGGCGGCGGCGGCGGTGGTGGTTGCGTTAACGTTGTTTCTAGGAAAAGAAGGTTCAAGGCTGGTGCCGGAGCTCCATCGTGTCGGCGGCGGACGGGGGCGAAGAAGTTCCGGGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATTAGGGACCCGTTGCGCCGCGTGCGGCTGTGGCTGGGAACCTACGACACCGCCGAGGAAGCCGCCATTGTGTACGACAACGCGGCCATTCAGCTTCGCGGTGCCGACGCGCTCACCAATTTCGTAACGCCGCCGCGGGAGAACAGAAAAACCGGTTACTGCTCCGGCGAGGAGTCACGGAACAACGACTTGCGTTCCCCCACTTCGGTTCTTGGGTGCCGTTCGGTGTACGAGGAAGCTGAGTCCGTAACCGCAAACGCAACCGGAAACGACGTCGTCGACGAGTCCGTAACAGTAGTCGCAAACGACGTCGTTGGGCCCTCAAGTGAGTGCGAGTATTCATGCGTTTCGGAAGATAGTAATAATGATAAGTTGAAACCGGAGTCAGTGTTTCCTATTCCAAACGATGTGGTGTTTGACTTTCAAAGCACGTTAGATATGTTTGATGAAGGGATTAATACTAATAATAATAATAATGTGGCAGAGAGTAGTATATTCTTGGCGGAGGATTTTGATTTCAAAGGAAGCTTTGTTAATGAGAATTTAGATTTGGGTTTTACGAGTTGGCATAGAGAGTGTGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA
Predicted protein sequences of Glyma05g37120
>Glyma05g37120.1   sequence type=predicted peptide   gene model=Glyma05g37120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSIKNTHHLNRTKLFMEEDTLLKKKRHYPKLIRIRVTDADATDSSSDDDEPSVSSTRRRVKYFVNEITIQGGGGGGGCVNVVSRKRRFKAGAGAPSCRRRTGAKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFVTPPRENRKTGYCSGEESRNNDLRSPTSVLGCRSVYEEAESVTANATGNDVVDESVTVVANDVVGPSSECEYSCVSEDSNNDKLKPESVFPIPNDVVFDFQSTLDMFDEGINTNNNNNVAESSIFLAEDFDFKGSFVNENLDLGFTSWHRECDNFQDIGDLFVWDPLVAL*






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