SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11110 | AT | Annotation by Michelle Graham. TAIR10: SPA1-related 2 | chr4:6772163-6776675 FORWARD LENGTH=1036 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0010100 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of photomorphogenesis | SoyBase | N/A | ISS |
| GO:0048608 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reproductive structure development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0279 | KOG | G protein beta subunit-like protein | JGI | ISS | |
| PTHR22847 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
| PTHR22847:SF121 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_B9RCP1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin ligase protein cop1, putative n=1 Tax=Ricinus communis RepID=B9RCP1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233982F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233982F related cluster n=1 Tax=unknown RepID=UPI000233982F | SoyBase | E_val: 0 | ISS |
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Glyma05g37070 not represented in the dataset |
Glyma05g37070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g02490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g214900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g37070.2 sequence type=CDS gene model=Glyma05g37070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTTTGTGGGTTAAAAAGCAGAAAAGAAAAGACAGGGGAAGCGTTGACGTGGAATGTAGCATGGATGTGAATCACGAAGATTTGTACTGTTGGAAAGCAGAACATGTAAATTGCAGCATGACGTCTCTAACAAGTTATGAAGTAGTAGTTTTATTATCCGGTGTGCGGTGGAACCTGATAAAGTCTGGCATTGACACTCAGATGGATTCTAAGGCATTGCCAAGCTCCAGTTTAAAGACTGCAAAGTCTCCTCATAATTCTACAGGGCCAGGATCTGGTGGGTCTGACACTGATGGTGTGACTTTGAGAGAATGGTTGAAATCTAGGCACTGCAAAGGGAGCAAAACAGATCATTTAAGTATATTTAGAAAAATTGTGGATTTGGTTGATGGTTCTCACTCTGAGGGAGTTGCAATGCACAATCTGTACCCTTCTCATATTAAATTGTTACCATCAAACCAGGTTATGTACCTTGGGTTGCCTACTCAGAAAAAGATATTAGATAGTATTGCAAATTCTGAAGTTCTTCAGCTAGAGAATTCTTTTATTAGGAAAAGGCTGTCAGAGAAGGTAATATCTGCCTCTCTTAATTTGCGGTCGAAGAAACAGAAATTCAATGAAAATGCTAGAGTTGCTGGTGATTGGAGTCAATGCCCTCCAAGGACTGACTTGAATCTTCAAATTGCCAATGATATTAAAGTCAATGCGGTGGGATCACAAGATTATTGCAATGAATACAAGGAAGATATCCAATTTTCTAAACATAATATGCAGAGCATGTCTCGCATCCCTCACATATTTAATGCAGGTCAATTGCAATTGAATTCTTTAAATGAAAGATTGGAAGATAAATGGTATGCAAGTCCTGAGGGTGGTTGCACAACATCATCAAATATCTACTGTCTGGGAGTCCTTCTTTTTGAGTTACTTAATGATTTTGACTCAGAAAGAGCACATATTGCTGCAATGTCTGATCTTGGTCGTAGGATTCTTCCTTCAGTTTTCCTTTCAGAGTATCCTATGGAGGCAGGATTTTGCCTTTGGATGATGCATCCTGAACCATCATCACGTCCAACAATAAGGGAGATCCTACAATCTGAAGTGATTAATGGAATGCGGGAGGTGTACTTTGAGGAATTATCATTAAGTCTTAATCAAGATGATGCAGAATCAGAATTGCTATTGCATTTCCTCATCTCACTAGAAGAGCAGAAGCACATGGATTCCAACAAATTGGCAGAAGAAATAAGATGCTTGGAATCAGATGTAAAAGAGGTTGAGAGGAGACATGACTTGAGAAAATCCTTGCTTCCCTCAAGCTTGCAGAACGACTCCTCTCTTCAAATAGAGAATGTGTCTCTTCTTAAAGAATCTTCAAGTTCAGAAACATTACCACCAGTATCCACAATTTCTAATGCAAATGAACTGAGATTGATGAAAAATATGTGCCTACTTGAAAGTGCTTACTTTTCCATGAGATCAAAAATTAAGCTTCCTGAAACAGATACTGCAACTCACCCAGATAAAGATATACTGAGAAATCATGACAATTGGTGTGTAGCTCAAAAAGACATGGAACAACATAAGACGACAGATACTTTAGGAGCTTTCTTTGATGGTTTGTGCAAGTCCACACGTTATAGCAAGTTTGAAGTGCGGGGCATAGTAAGAAATACTGATTTTAACAATCCTGCAAATGTAATCTGCTCTCTGAGTTTTGATAGGGATGAAGACTACTTTGCTGCTGCTGGGATATCAAAGAAAATTAAAATTTTTGAGTTCAATGCACTTTTCAATGACTCCATTGACATCCATTATCCTGTAGTTGAGATGTCAAACAGATCAAGGCTCAGTTGTGTTTGCTGGAATAACTACATCCAGAACTATCTTGCCTCGACAGACTATGATGGTGCAGTGAAGCTATGGGATGCTAACACAGGCCAGGGGTTTTCTGGATTCACCGAACATGAAAAGAGGGCTTGGTCTGTTGATTTCTCTTTGGTATGCCCTACTAAATTTGTTAGTGGGAGTGATGATTGTTCTGTGAAACTGTGGAGTATCAATGAGAAAAAGAGTTTAGCCACAATCAGGAATGTTGCTAATGTCTGCTGTGTTCAGTTCTCTACTCATTCCTCTCATTTGCTGGCCTTTGGATCTGCTGATTACTCAGCATATTGCTATGATCTTCGCAATCTTAGAAGCCCTTGGTGTGTGTTGGCTGGCCATCGTAAAGCTGTAAGCTACGTCAAATTCTTGGACTCTGAGACACTTGTTTCTGCATCAACCGATAATATGTTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTCTATCAACTAGTGCTTGCAGCTTAACCTTGTCAGGACATACTAATGAGAAGAATTTTGTGGGTTTATCAGTTGCTGATGGATATATAGCATGTGGTTCAGAAACAAATGAGGTTTTTGCCTACTATAAATCACTTCCAATGCCAGTCACTTCGCACAGGTTTGGGTCCATTGATCCTATTTCTGGTAAAGAGACAGATGTTGACAATGGTCTGTTTGTTTCAAGTGTGTGCTGGAGAGAGAAATCAGACATGGTTATTGCTGCCAATTCAAGTGGATGTATAAAAGTTCTACAGATGGTTTGA
>Glyma05g37070.2 sequence type=predicted peptide gene model=Glyma05g37070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCLWVKKQKRKDRGSVDVECSMDVNHEDLYCWKAEHVNCSMTSLTSYEVVVLLSGVRWNLIKSGIDTQMDSKALPSSSLKTAKSPHNSTGPGSGGSDTDGVTLREWLKSRHCKGSKTDHLSIFRKIVDLVDGSHSEGVAMHNLYPSHIKLLPSNQVMYLGLPTQKKILDSIANSEVLQLENSFIRKRLSEKVISASLNLRSKKQKFNENARVAGDWSQCPPRTDLNLQIANDIKVNAVGSQDYCNEYKEDIQFSKHNMQSMSRIPHIFNAGQLQLNSLNERLEDKWYASPEGGCTTSSNIYCLGVLLFELLNDFDSERAHIAAMSDLGRRILPSVFLSEYPMEAGFCLWMMHPEPSSRPTIREILQSEVINGMREVYFEELSLSLNQDDAESELLLHFLISLEEQKHMDSNKLAEEIRCLESDVKEVERRHDLRKSLLPSSLQNDSSLQIENVSLLKESSSSETLPPVSTISNANELRLMKNMCLLESAYFSMRSKIKLPETDTATHPDKDILRNHDNWCVAQKDMEQHKTTDTLGAFFDGLCKSTRYSKFEVRGIVRNTDFNNPANVICSLSFDRDEDYFAAAGISKKIKIFEFNALFNDSIDIHYPVVEMSNRSRLSCVCWNNYIQNYLASTDYDGAVKLWDANTGQGFSGFTEHEKRAWSVDFSLVCPTKFVSGSDDCSVKLWSINEKKSLATIRNVANVCCVQFSTHSSHLLAFGSADYSAYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNMLKIWDLNKTSPVGLSTSACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVFAYYKSLPMPVTSHRFGSIDPISGKETDVDNGLFVSSVCWREKSDMVIAANSSGCIKVLQMV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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