SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11080 | AT | Annotation by Michelle Graham. TAIR10: HMG (high mobility group) box protein | chr4:6760898-6763272 REVERSE LENGTH=446 | SoyBase | E_val: 1.00E-162 | ISS |
| GO:0000793 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: condensed chromosome | SoyBase | N/A | ISS |
| GO:0000794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: condensed nuclear chromosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG0381 | KOG | HMG box-containing protein | JGI | ISS | |
| PTHR13711 | Panther | SWI/SNF-RELATED CHROMATIN BINDING PROTEIN | JGI | ISS | |
| PTHR13711:SF39 | Panther | HIGH MOBILITY GROUP PROTEIN HMG-2A,4 | JGI | ISS | |
| PF00505 | PFAM | HMG (high mobility group) box | JGI | ISS | |
| UniRef100_B9GL80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: High mobility group family n=2 Tax=Populus trichocarpa RepID=B9GL80_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K6A8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6A8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g37010 not represented in the dataset |
Glyma05g37010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g02550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g215500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g37010.2 sequence type=transcript gene model=Glyma05g37010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACACTGACTCACTGTTCTGATTCATATCCGAAATACAATTCCGTTATTCCCTCTCTCTCTTTTGTTTCATCGATGGGCGACACTGTTGTTGCTGAAGTACCCGCAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGATGCCAACATCATCATAGCCACACCAATTTCGCCATCATCCGATAAGGCACAAGTTCCCTCAAAGAAAAAACAAGATTCCAAGAAGCAGCAATCTTTCGAGAAAGAATTGCTTGAGATGCAGGAAATGTTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGCTCAAGGACGAGGCTCTCAAGCAGAAAGACGAAGAGCTCAAAAACCGCGGCCGCGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAGGGGTGCTCTGAGAAGAAAAGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACTCAGAGGCAGAATTTAAGGAAATTTCTACCATGCTGGGTTCTAAATGGAAGACTGTTACTGCAGAAGAGAAGAAGCCTTATGAGGAGATATACCATGCCGAGAAAGAAGCTTATTTGCAAATGATTGCAAAGGAAAAACGTGAGACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAAGACTGCCATGGAGTTGCTCGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAGTAAGTTATATATATATACCTCCCTTTGGACCATTCTTCTATGTTGTG
>Glyma05g37010.1 sequence type=CDS gene model=Glyma05g37010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCGACACTGTTGTTGCTGAAGTACCCGCAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGATGCCAACATCATCATAGCCACACCAATTTCGCCATCATCCGATAAGGCACAAGTTCCCTCAAAGAAAAAACAAGATTCCAAGAAGCAGCAATCTTTCGAGAAAGAATTGCTTGAGATGCAGGAAATGTTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGCTCAAGGACGAGGCTCTCAAGCAGAAAGACGAAGAGCTCAAAAACCGCGGCCGCGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAGGGGTGCTCTGAGAAGAAAAGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACTCAGAGGCAGAATTTAAGGAAATTTCTACCATGCTGGGTTCTAAATGGAAGACTGTTACTGCAGAAGAGAAGAAGCCTTATGAGGAGATATACCATGCCGAGAAAGAAGCTTATTTGCAAATGATTGCAAAGGAAAAACGTGAGACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAAGACTGCCATGGAGTTGCTCGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAATGATAGACGAGCAGCTCTTGTTGCTGAGAACAAGAATTTCTTGGAGGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAGAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGAAATATGCCCTAGAAATGGAGGTTTATAAACAGAAGAAAGATGAGGAGGCTGCCCATTTCATGAAGGAAGAGGAGGAGCATATGAAACTTCAAAAACAAGAAGCATTGCAACTGCTGAAGAAGAAGGAGAAAACCGAAAATATAATCAAGAAAACAAAACAGAAGAAGAAACAAAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCTTTCATCTTATTCAGCAAAGAAGCAAAGAAAACTTTACATGAGGAGCGACCAGGAATCAACACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGGAACTGAGCGTGGAGGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCATTGCCGCAACTGCAAGCCAGGAGCTGAAAACCGAATAA >Glyma05g37010.2 sequence type=CDS gene model=Glyma05g37010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCGACACTGTTGTTGCTGAAGTACCCGCAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGATGCCAACATCATCATAGCCACACCAATTTCGCCATCATCCGATAAGGCACAAGTTCCCTCAAAGAAAAAACAAGATTCCAAGAAGCAGCAATCTTTCGAGAAAGAATTGCTTGAGATGCAGGAAATGTTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGCTCAAGGACGAGGCTCTCAAGCAGAAAGACGAAGAGCTCAAAAACCGCGGCCGCGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAGGGGTGCTCTGAGAAGAAAAGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACTCAGAGGCAGAATTTAAGGAAATTTCTACCATGCTGGGTTCTAAATGGAAGACTGTTACTGCAGAAGAGAAGAAGCCTTATGAGGAGATATACCATGCCGAGAAAGAAGCTTATTTGCAAATGATTGCAAAGGAAAAACGTGAGACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAAGACTGCCATGGAGTTGCTCGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAGTAA
>Glyma05g37010.1 sequence type=predicted peptide gene model=Glyma05g37010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDTVVAEVPAKRGRGRRALKEKTPSTNDANIIIATPISPSSDKAQVPSKKKQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKLKDEALKQKDEELKNRGREQEKLQTELKKLQKLKEFKPTMNLPVLKDNEEKKDKKKKGCSEKKRPSPPYILWMKDQWNEIKKANSEAEFKEISTMLGSKWKTVTAEEKKPYEEIYHAEKEAYLQMIAKEKRETEAMRLLEDEQKQKTAMELLEQYMQFKQEAEKEGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALVAENKNFLEVPKITAEEWKNMTEEQKRPYEEMAKKNKEKYALEMEVYKQKKDEEAAHFMKEEEEHMKLQKQEALQLLKKKEKTENIIKKTKQKKKQNKDDKNSDPNRPKKPASSFILFSKEAKKTLHEERPGINTSTLNALVSLKWKELSVEDRQFWNGQASKAMDAYKKELEEYNKSIAATASQELKTE* >Glyma05g37010.2 sequence type=predicted peptide gene model=Glyma05g37010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDTVVAEVPAKRGRGRRALKEKTPSTNDANIIIATPISPSSDKAQVPSKKKQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKLKDEALKQKDEELKNRGREQEKLQTELKKLQKLKEFKPTMNLPVLKDNEEKKDKKKKGCSEKKRPSPPYILWMKDQWNEIKKANSEAEFKEISTMLGSKWKTVTAEEKKPYEEIYHAEKEAYLQMIAKEKRETEAMRLLEDEQKQKTAMELLEQYMQFKQEAEKEGKKNK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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