SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64355 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3593 (InterPro:IPR021995); Has 301 Blast hits to 301 proteins in 96 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). | chr1:23886152-23886987 FORWARD LENGTH=199 | SoyBase | E_val: 1.00E-67 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF12159 | PFAM | Protein of unknown function (DUF3593) | JGI | ISS | |
| UniRef100_I1K6A4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K6A4_SOYBN | SoyBase | E_val: 7.00E-136 | ISS |
| UniRef100_Q8YNQ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Asl4507 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YNQ5_NOSS1 | SoyBase | E_val: 1.00E-33 | ISS |
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Glyma05g36980 not represented in the dataset |
Glyma05g36980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g215800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g36980.2 sequence type=transcript gene model=Glyma05g36980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGAGTTGAGTTTGAGTGACGAATGAACAAGATTGAAATGGCAGCTACTATTAACTTGTCCCTGCCCCTTTTGTCCCTCTGCAAACCCCCTAAGTTTCTGAAACCTCCAACAACAAGATTTCTGCAACATGAATACGTAAACAGCCTCAGCCTCAGCCTCAGAAGAAGAATCACTGAATCAAACACTTGCAGAAAAAGAAGAGGGATCGTGTGCGGGTTGCCATTGCCAGTTGATCCATGGGCACCTACCATTGACTCCCAGAGCATCGCATCCCAGCTCTTCGCGTTTTCCTTGTTTCCATACATCGGATTCTTGTACTTCATTACCAAGTCCAAGACCGCTCCCAACCTCACCCTCTTCGGCTTTTACTTCTTGCTTGCCTTTGTTGGAGCCACAACGAAGGTGCATTATGGGACTTCTTTGTCCAATGTAGACTGGTTACACGGTGGGGCTGAGTCGCTCCTCACTCTCACTAACTTGTTCATTGTCTTGGGTCTCAGAGAGGGTCTCAGAAAAGCTGAAAATTCACAACGTGATCAAAATGCTTCCACTCCCAATTCAGGCTTGGACGAGTAGAACAAGAAGAAACGTAGAATGCAGATTTGATATTACAAGTCATTCTATTGTCAGTTTCTCACTATCATTATATACTTATATAATTTCATGATCATGGGCTGTGTTGTAAATAAAGTGGATATAAGTGCTGGATATTTGTGTAATTAAATCATCAATTCGAATGAAATGTTACAGAGTTTTGGCCAGCGTATCCAATTTTGATGTGTAATTTTTTATCTGCTCCCTTTACTACCCTTCAATAATGTTCTAAAAGCTCTCTTATATGAATAATATTCTTTTTTTGGATGATGTAATCTTGTA
>Glyma05g36980.1 sequence type=CDS gene model=Glyma05g36980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAAGATTGAAATGGCAGCTACTATTAACTTGTCCCTGCCCCTTTTGTCCCTCTGCAAACCCCCTAAGTTTCTGAAACCTCCAACAACAAGATTTCTGCAACATGAATACGTAAACAGCCTCAGCCTCAGCCTCAGAAGAAGAATCACTGAATCAAACACTTGCAGAAAAAGAAGAGGGATCGTGTGCGGGTTGCCATTGCCAGTTGATCCATGGGCACCTACCATTGACTCCCAGAGCATCGCATCCCAGCTCTTCGCGTTTTCCTTGTTTCCATACATCGGATTCTTGTACTTCATTACCAAGTCCAAGACCGCTCCCAACCTCACCCTCTTCGGCTTTTACTTCTTGCTTGCCTTTGTTGGAGCCACAATACCAGCTGGAATTTATGCGAAGGTGCATTATGGGACTTCTTTGTCCAATGTAGACTGGTTACACGGTGGGGCTGAGTCGCTCCTCACTCTCACTAACTTGTTCATTGTCTTGGGTCTCAGAGAGGGTCTCAGAAAAGCTGAAAATTCACAACGTGATCAAAATGCTTCCACTCCCAATTCAGGCTTGGACGAGTAG >Glyma05g36980.2 sequence type=CDS gene model=Glyma05g36980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAAGATTGAAATGGCAGCTACTATTAACTTGTCCCTGCCCCTTTTGTCCCTCTGCAAACCCCCTAAGTTTCTGAAACCTCCAACAACAAGATTTCTGCAACATGAATACGTAAACAGCCTCAGCCTCAGCCTCAGAAGAAGAATCACTGAATCAAACACTTGCAGAAAAAGAAGAGGGATCGTGTGCGGGTTGCCATTGCCAGTTGATCCATGGGCACCTACCATTGACTCCCAGAGCATCGCATCCCAGCTCTTCGCGTTTTCCTTGTTTCCATACATCGGATTCTTGTACTTCATTACCAAGTCCAAGACCGCTCCCAACCTCACCCTCTTCGGCTTTTACTTCTTGCTTGCCTTTGTTGGAGCCACAACGAAGGTGCATTATGGGACTTCTTTGTCCAATGTAGACTGGTTACACGGTGGGGCTGAGTCGCTCCTCACTCTCACTAACTTGTTCATTGTCTTGGGTCTCAGAGAGGGTCTCAGAAAAGCTGAAAATTCACAACGTGATCAAAATGCTTCCACTCCCAATTCAGGCTTGGACGAGTAG
>Glyma05g36980.1 sequence type=predicted peptide gene model=Glyma05g36980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNKIEMAATINLSLPLLSLCKPPKFLKPPTTRFLQHEYVNSLSLSLRRRITESNTCRKRRGIVCGLPLPVDPWAPTIDSQSIASQLFAFSLFPYIGFLYFITKSKTAPNLTLFGFYFLLAFVGATIPAGIYAKVHYGTSLSNVDWLHGGAESLLTLTNLFIVLGLREGLRKAENSQRDQNASTPNSGLDE* >Glyma05g36980.2 sequence type=predicted peptide gene model=Glyma05g36980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNKIEMAATINLSLPLLSLCKPPKFLKPPTTRFLQHEYVNSLSLSLRRRITESNTCRKRRGIVCGLPLPVDPWAPTIDSQSIASQLFAFSLFPYIGFLYFITKSKTAPNLTLFGFYFLLAFVGATTKVHYGTSLSNVDWLHGGAESLLTLTNLFIVLGLREGLRKAENSQRDQNASTPNSGLDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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