SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G23840 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein | chr4:12400379-12403190 FORWARD LENGTH=597 | SoyBase | E_val: 1.00E-169 | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| PTHR23125 | Panther | F-BOX/LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR23125:SF115 | Panther | LEUCINE-RICH REPEAT FAMILY PROTEIN | JGI | ISS | |
| UniRef100_B9RCS2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RCS2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023396DB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023396DB related cluster n=1 Tax=unknown RepID=UPI00023396DB | SoyBase | E_val: 0 | ISS |
|
Glyma05g36920 not represented in the dataset |
Glyma05g36920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g216500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g36920.2 sequence type=transcript gene model=Glyma05g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGCAAAGCATGGGCTCTCATAAACCGACATGGGTTAGGCCCAATGAGCAGGTTTTTGGTTTTTTCTTTTGGGAAGAAGCAAGTTTCGTCTTCAACAATCAACATCATGATCTGACTCTAGCCGAATCGAAATCAAAGTCAGACTCGCGTAATCTCATATCATATCATTCTTCCGATTTCAGAAGTCAGAGAGAGAGAAGATGAAGAGCGAAAGCGAATTGGTTGGATTCTGCATTGAGGCAGCATGTGAGAGCAGAGAAAGCGTGGATAAATGGCGGATGCAGAGCCGCAGTCTCGATCGCTTGCCTTCTCATCTCGCCGACTCTCTCCTCCGCCGCCTCATCGCCCGCCGCCTCCTTTACCCCTCTCTCCTCGAGGTTTTCAAACATAGTGCTGAAGAGGTTGATGTGAGAGGGGACAACTCCGTGGACGCAGAATGGATGGCGTATTTGGGAGCATATCGTCACTTGCGCTACTTGAACCTCTCCGATTGTCATCGAGTCTCCACTTCAGCTCTTTGGCCAATTACAGGAATGAGTAGCCTTCAGGAGTTGGATCTATCTAGATGCTTCAAGGTCAACGATGCTGGAATTAACCATATTCTTTCCATTCCTAATCTGGAGAGGCTACGTATTTCAGAAACAAGCGTCACTGCAAAAGGAGTCAAGCTTCTCGCCTCGCTTAAAAACTTGTCTCTTCTTGACTTGGGTGGTTTGCCTGTTGATGACGTCGCATTAACTTCATTGCAGGTACTGAAAAGGCTACATTATATTGATCTCTGGGGTAGTAAAATATCAAACAAAGGTGCTTCTGTTCTCAATACATTCCCAAAGTTGACCTATCTCAATCTTGCTTGGACCAGTGTCACAAAATTGCCTAAATTATCATTTCTTGAATACCTGAACATGAGTAACTGTACTATTGATTCTATACTTGAAGATGATAAAGCTCCTTTGGCAAAGCTTATTCTCTCTGGGGCCATGTTCATGAATGAAGCTGAAGCTTTGTTATATGCAAATACAAATTTCCTATCCTTTTTGGACGTGGCCAATTCCAGCTTTCACAGATTCTTCTTCTTAAGTAAAATGAAAGTGATAGAACATCTCAATCTCAGCTCATGCATGATGGGGGATGATTCAGTTGAGATGGTTGCGTGCGCTGGTGGAAACTTGAAAAGTCTGAATTTGAGTGGTACCAGGGTTAGTTCTGCTGGATTAGGGATTTTAGCTGGACATGTTCCCCATCTTGAAATTCTGTCATTATCTCAGACACCAGTGGATGACACTGCCATCTCATTTATCAGTATGATGCCTTCATTAAAGGATGTTGACCTGAGCAATACAAATATTAAAGGTTTTCTGCACCAAGGAAGGACTGATGTGAACTCCCTGCTCTCTCTAATGGCTCTGCAAAATCTTAAATTAGAAAGGTTGAATTTGGAGCATACGCAAGTTAGGGATGAAGCGTTATACCCTTTGTCAAGCTTCCAAGAGCTGAGATATTTATCTCTTAAAAGTGCTTCACTTGCAGACATCTCACTTTACTATTTATCATCAATTCCTAAATTGACAAATCTTAGTATTTGTGATGCGGTATTGACAAATTATGGGCTTGATATGTTTAAGGCTCCTGAAACTCTGAAACTGCTGGACCTCAAAGGTTGTTGGCTCTTAACTGAAGACACTATCTTGTCATTCTGTAGAAATCATCCACAAGTTGAAGTCAGGCATGAACTTGGTACCTTATTTCCTGTCAATCAAAACGGACTTAATCATTCCTCTCCATCTCGATCAACTTCCAAGACTATGCAAATGACTAAGAAGAAAGATCAAATTCCCTTATCTCCATATTTTGTTGATCAAAGATTGAAGTATAGCAGGGACGAGTTACTTGCATTGCAGTTTACATCTTTGCCCCTTGCATCTAGTAGTGAGAGTGGCAATTCAATATTTGAGAAACAATTGGGTTGAGTGGAGAAATCTCCTTCCATATAATTGTTTGCACTCATGGCGTTGGGAAGGGAATGCGATTTGAACAGAGATTGCCTCAGGATTAACAGCCCAAGTATGATGTTATTCAATGTTTCATAAGTATGGCTTCTCACCAAAAGGAAAGGTGCAACTCGAATGCACAAGCTCAAAGCTGAATCACGTTTCTGATAGAGAAATCGAATGATATGCCTTGACTCCAACTTAGTAAACATGTAGATATGCAATGTGGTTAAAGAAAGGCTTTTTAGTAATTTTATTGCATGATTTGGCTGACACGTTATTCTTTTTCCAGTGCAATGGTGAACACATCACACATGGAATGTGAAAGATTGCTGGTTCTTAGTTTCTGCGGGTTTCTGTGTGTGTTTAGCCAGTTATTTGTGGGTTTTCTTCTCCTTCTAAGGAAAAGCTAGGCAAAATATTTTGTGTAGAAGCTCTTAAAAATAAAAGGAGCTCTTTTTTATTAAAGAAAAGATGAAAAAAAGAGCATCTTAAAAGTAAGCTCTCTTGAGCAATTTTTTATAGTTTTTCGCTGGCTTATGCTTAAAGCACCAGCCTTCGAATTCCAATTTCCCATTTTTTTTAACTTCTTAAAAGCGTGTATGAAAAATTATGTTCGATCAGCAATATTTTGTGGTATATAAATTTGTATAAACTATATATTTAAGCCGTAAGCCATTTAGTG
>Glyma05g36920.1 sequence type=CDS gene model=Glyma05g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGCGAAAGCGAATTGGTTGGATTCTGCATTGAGGCAGCATGTGAGAGCAGAGAAAGCGTGGATAAATGGCGGATGCAGAGCCGCAGTCTCGATCGCTTGCCTTCTCATCTCGCCGACTCTCTCCTCCGCCGCCTCATCGCCCGCCGCCTCCTTTACCCCTCTCTCCTCGAGGTTTTCAAACATAGTGCTGAAGAGGTTGATGTGAGAGGGGACAACTCCGTGGACGCAGAATGGATGGCGTATTTGGGAGCATATCGTCACTTGCGCTACTTGAACCTCTCCGATTGTCATCGAGTCTCCACTTCAGCTCTTTGGCCAATTACAGGAATGAGTAGCCTTCAGGAGTTGGATCTATCTAGATGCTTCAAGGTCAACGATGCTGGAATTAACCATATTCTTTCCATTCCTAATCTGGAGAGGCTACGTATTTCAGAAACAAGCGTCACTGCAAAAGGAGTCAAGCTTCTCGCCTCGCTTAAAAACTTGTCTCTTCTTGACTTGGGTGGTTTGCCTGTTGATGACGTCGCATTAACTTCATTGCAGCTTATTCTCTCTGGGGCCATGTTCATGAATGAAGCTGAAGCTTTGTTATATGCAAATACAAATTTCCTATCCTTTTTGGACGTGGCCAATTCCAGCTTTCACAGATTCTTCTTCTTAAGTAAAATGAAAGTGATAGAACATCTCAATCTCAGCTCATGCATGATGGGGGATGATTCAGTTGAGATGGTTGCGTGCGCTGGTGGAAACTTGAAAAGTCTGAATTTGAGTGGTACCAGGGTTAGTTCTGCTGGATTAGGGATTTTAGCTGGACATGTTCCCCATCTTGAAATTCTGTCATTATCTCAGACACCAGTGGATGACACTGCCATCTCATTTATCAGTATGATGCCTTCATTAAAGGATGTTGACCTGAGCAATACAAATATTAAAGGTTTTCTGCACCAAGGAAGGACTGATGTGAACTCCCTGCTCTCTCTAATGGCTCTGCAAAATCTTAAATTAGAAAGGTTGAATTTGGAGCATACGCAAGTTAGGGATGAAGCGTTATACCCTTTGTCAAGCTTCCAAGAGCTGAGATATTTATCTCTTAAAAGTGCTTCACTTGCAGACATCTCACTTTACTATTTATCATCAATTCCTAAATTGACAAATCTTAGTATTTGTGATGCGGTATTGACAAATTATGGGCTTGATATGTTTAAGGCTCCTGAAACTCTGAAACTGCTGGACCTCAAAGGTTGTTGGCTCTTAACTGAAGACACTATCTTGTCATTCTGTAGAAATCATCCACAAGTTGAAGTCAGGCATGAACTTGGTACCTTATTTCCTGTCAATCAAAACGGACTTAATCATTCCTCTCCATCTCGATCAACTTCCAAGACTATGCAAATGACTAAGAAGAAAGATCAAATTCCCTTATCTCCATATTTTGTTGATCAAAGATTGAAGTATAGCAGGGACGAGTTACTTGCATTGCAGTTTACATCTTTGCCCCTTGCATCTAGTAGTGAGAGTGGCAATTCAATATTTGAGAAACAATTGGGTTGA >Glyma05g36920.2 sequence type=CDS gene model=Glyma05g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGCGAAAGCGAATTGGTTGGATTCTGCATTGAGGCAGCATGTGAGAGCAGAGAAAGCGTGGATAAATGGCGGATGCAGAGCCGCAGTCTCGATCGCTTGCCTTCTCATCTCGCCGACTCTCTCCTCCGCCGCCTCATCGCCCGCCGCCTCCTTTACCCCTCTCTCCTCGAGGTTTTCAAACATAGTGCTGAAGAGGTTGATGTGAGAGGGGACAACTCCGTGGACGCAGAATGGATGGCGTATTTGGGAGCATATCGTCACTTGCGCTACTTGAACCTCTCCGATTGTCATCGAGTCTCCACTTCAGCTCTTTGGCCAATTACAGGAATGAGTAGCCTTCAGGAGTTGGATCTATCTAGATGCTTCAAGGTCAACGATGCTGGAATTAACCATATTCTTTCCATTCCTAATCTGGAGAGGCTACGTATTTCAGAAACAAGCGTCACTGCAAAAGGAGTCAAGCTTCTCGCCTCGCTTAAAAACTTGTCTCTTCTTGACTTGGGTGGTTTGCCTGTTGATGACGTCGCATTAACTTCATTGCAGGTACTGAAAAGGCTACATTATATTGATCTCTGGGGTAGTAAAATATCAAACAAAGGTGCTTCTGTTCTCAATACATTCCCAAAGTTGACCTATCTCAATCTTGCTTGGACCAGTGTCACAAAATTGCCTAAATTATCATTTCTTGAATACCTGAACATGAGTAACTGTACTATTGATTCTATACTTGAAGATGATAAAGCTCCTTTGGCAAAGCTTATTCTCTCTGGGGCCATGTTCATGAATGAAGCTGAAGCTTTGTTATATGCAAATACAAATTTCCTATCCTTTTTGGACGTGGCCAATTCCAGCTTTCACAGATTCTTCTTCTTAAGTAAAATGAAAGTGATAGAACATCTCAATCTCAGCTCATGCATGATGGGGGATGATTCAGTTGAGATGGTTGCGTGCGCTGGTGGAAACTTGAAAAGTCTGAATTTGAGTGGTACCAGGGTTAGTTCTGCTGGATTAGGGATTTTAGCTGGACATGTTCCCCATCTTGAAATTCTGTCATTATCTCAGACACCAGTGGATGACACTGCCATCTCATTTATCAGTATGATGCCTTCATTAAAGGATGTTGACCTGAGCAATACAAATATTAAAGGTTTTCTGCACCAAGGAAGGACTGATGTGAACTCCCTGCTCTCTCTAATGGCTCTGCAAAATCTTAAATTAGAAAGGTTGAATTTGGAGCATACGCAAGTTAGGGATGAAGCGTTATACCCTTTGTCAAGCTTCCAAGAGCTGAGATATTTATCTCTTAAAAGTGCTTCACTTGCAGACATCTCACTTTACTATTTATCATCAATTCCTAAATTGACAAATCTTAGTATTTGTGATGCGGTATTGACAAATTATGGGCTTGATATGTTTAAGGCTCCTGAAACTCTGAAACTGCTGGACCTCAAAGGTTGTTGGCTCTTAACTGAAGACACTATCTTGTCATTCTGTAGAAATCATCCACAAGTTGAAGTCAGGCATGAACTTGGTACCTTATTTCCTGTCAATCAAAACGGACTTAATCATTCCTCTCCATCTCGATCAACTTCCAAGACTATGCAAATGACTAAGAAGAAAGATCAAATTCCCTTATCTCCATATTTTGTTGATCAAAGATTGAAGTATAGCAGGGACGAGTTACTTGCATTGCAGTTTACATCTTTGCCCCTTGCATCTAGTAGTGAGAGTGGCAATTCAATATTTGAGAAACAATTGGGTTGA
>Glyma05g36920.1 sequence type=predicted peptide gene model=Glyma05g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSESELVGFCIEAACESRESVDKWRMQSRSLDRLPSHLADSLLRRLIARRLLYPSLLEVFKHSAEEVDVRGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAGINHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLSSCMMGDDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAISFISMMPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLKLERLNLEHTQVRDEALYPLSSFQELRYLSLKSASLADISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLLDLKGCWLLTEDTILSFCRNHPQVEVRHELGTLFPVNQNGLNHSSPSRSTSKTMQMTKKKDQIPLSPYFVDQRLKYSRDELLALQFTSLPLASSSESGNSIFEKQLG* >Glyma05g36920.2 sequence type=predicted peptide gene model=Glyma05g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSESELVGFCIEAACESRESVDKWRMQSRSLDRLPSHLADSLLRRLIARRLLYPSLLEVFKHSAEEVDVRGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAGINHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHYIDLWGSKISNKGASVLNTFPKLTYLNLAWTSVTKLPKLSFLEYLNMSNCTIDSILEDDKAPLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLSSCMMGDDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAISFISMMPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLKLERLNLEHTQVRDEALYPLSSFQELRYLSLKSASLADISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLLDLKGCWLLTEDTILSFCRNHPQVEVRHELGTLFPVNQNGLNHSSPSRSTSKTMQMTKKKDQIPLSPYFVDQRLKYSRDELLALQFTSLPLASSSESGNSIFEKQLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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