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Report for Sequence Feature Glyma05g36620

Feature Type:gene_model
Chromosome:Gm05
Start:40443107
stop:40447303
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g36620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42020AT Annotation by Michelle Graham. TAIR10: Heat shock protein 70 (Hsp 70) family protein | chr5:16807697-16810480 REVERSE LENGTH=668 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0010197GO-bp Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005788GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum lumen SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016592GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mediator complex SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0100 KOG Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily JGI ISS
PTHR19375Panther HEAT SHOCK PROTEIN 70KDA JGI ISS
PF00012PFAM Hsp70 protein JGI ISS
UniRef100_I1K670UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K670_SOYBN SoyBaseE_val: 0ISS
UniRef100_O22639UniRef Annotation by Michelle Graham. Most informative UniRef hit: Endoplasmic reticulum HSC70-cognate binding protein n=1 Tax=Glycine max RepID=O22639_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g36620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g36620
ParalogEvidenceComments
Glyma08g02940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g36620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g219400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g36620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g36620
>Glyma05g36620.2   sequence type=transcript   gene model=Glyma05g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAGTTCACGAAATGACCAGGTTTCGGTAGAGTCCCTCACCACACTACATAAAAGCCTCGCTCCCTCGTGCCATTTCAAAACCCAGAAACCAATTACAAATTACACTCTTTGCCCTCGCACCTTCAACTTAACCTTTTCTACTCATAATCTTAACAACTTGCTAGAAGAAGATAAAGAAAGAGAAAAAGTGTGTGTGTGAGAGAGAGAGCAATGGCTGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTGGCTATCATTTCCTTCGGATGTTTATTTGCAATTTCCATTGCTAAGGAGGAAGCCACAAAATTGGGGACGGTCATCGGGATTGATCTTGGAACGACCTATTCATGTGTTGGTGTTTACAAGAACGGCCATGTTGAAATCATAGCCAATGATCAAGGTAACCGTATCACCCCATCGTGGGTTGCTTTCACCGACAGTGAGAGACTAATTGGAGAGGCTGCCAAGAATCTGGCAGCTGTCAACCCAGAAAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTCGAAGATAAGGAAGTTCAAAGAGATATGAAGCTTGTTCCTTATAAGATTGTCAACAAGGATGGAAAACCTTACATACAAGTGAAAATTAAGGATGGTGAGACCAAGGTGTTCAGCCCTGAGGAAATCAGTGCCATGATTCTGACTAAGATGAAGGAAACTGCGGAAGCATTCCTTGGAAAGAAAATTAATGATGCCGTGGTCACTGTCCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGTCTCAATGTTGCTAGAATTATCAATGAACCCACTGCTGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGCGAGAAGAACATTCTAGTCTTTGATCTTGGTGGTGGGACCTTTGATGTCAGTATCTTGACAATTGATAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGAAAAAGCATGGAAAGGATATTAGCAAGGACAACAGAGCACTTGGCAAGCTGAGGAGAGAGGCTGAGCGTGCAAAGAGGGCTCTCAGCAGCCAGCACCAGGTCCGCGTGGAAATTGAATCACTTTTTGATGGTGTTGATTTTTCTGAGCCACTCACCCGAGCTCGTTTTGAGGAGTTGAACAATGATTTGTTCCGGAAGACCATGGGGCCAGTGAAGAAGGCTATGGAAGATGCAGGATTACAGAAGAGTCAGATTGATGAGATTGTTCTTGTTGGTGGAAGCACAAGGATTCCAAAGGTACAACAGCTTTTGAAGGACTACTTTGATGGAAAGGAGCCAAACAAGGGTGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCTAAATGTGAAGGCAGAAGACAAGGGCACTGGTAAATCAGAAAAGATCACCATTACAAACGAAAAGGGACGTCTTAGCCAGGAAGAAATTGAGAGAATGGTTCGCGAAGCAGAGGAGTTTGCAGAGGAAGACAAGAAGGCGAAGAAGACGAGGACGATTCTCACGATGAGCTCTAGATTAGTCGGAGTCTGTTAAATTTTTATGATAGCTGGGAATTAAGAAGTCCCCTGCGCTTGCTTTTTTGGTGGCGATGATAAGATACTTTGTGAAATTACTTGTACTTTACTTTTTTGCTTAGTTTTACGACGAAACTTCTTCAGCTGTATGAATGAGCCTTGTTTCACTTCTATTCTCTTACGCTCCTGTTTTTCGCGTGCTTCGTGCCTGTTTTGCCGACCATAAGTTTTTAAATCAAGTCTTTGTAATTTAAAACAGGAAACCTCCGTAAAATATTATTGAGCCATTTTATAAAAACTCACGTACGGATAT
Coding sequences of Glyma05g36620
>Glyma05g36620.1   sequence type=CDS   gene model=Glyma05g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTGGCTATCATTTCCTTCGGATGTTTATTTGCAATTTCCATTGCTAAGGAGGAAGCCACAAAATTGGGGACGGTCATCGGGATTGATCTTGGAACGACCTATTCATGTGTTGGTGTTTACAAGAACGGCCATGTTGAAATCATAGCCAATGATCAAGGTAACCGTATCACCCCATCGTGGGTTGCTTTCACCGACAGTGAGAGACTAATTGGAGAGGCTGCCAAGAATCTGGCAGCTGTCAACCCAGAAAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTCGAAGATAAGGAAGTTCAAAGAGATATGAAGCTTGTTCCTTATAAGATTGTCAACAAGGATGGAAAACCTTACATACAAGTGAAAATTAAGGATGGTGAGACCAAGGTGTTCAGCCCTGAGGAAATCAGTGCCATGATTCTGACTAAGATGAAGGAAACTGCGGAAGCATTCCTTGGAAAGAAAATTAATGATGCCGTGGTCACTGTCCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGTCTCAATGTTGCTAGAATTATCAATGAACCCACTGCTGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGCGAGAAGAACATTCTAGTCTTTGATCTTGGTGGTGGGACCTTTGATGTCAGTATCTTGACAATTGATAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGAAAAAGCATGGAAAGGATATTAGCAAGGACAACAGAGCACTTGGCAAGCTGAGGAGAGAGGCTGAGCGTGCAAAGAGGGCTCTCAGCAGCCAGCACCAGGTCCGCGTGGAAATTGAATCACTTTTTGATGGTGTTGATTTTTCTGAGCCACTCACCCGAGCTCGTTTTGAGGAGTTGAACAATGATTTGTTCCGGAAGACCATGGGGCCAGTGAAGAAGGCTATGGAAGATGCAGGATTACAGAAGAGTCAGATTGATGAGATTGTTCTTGTTGGTGGAAGCACAAGGATTCCAAAGGTACAACAGCTTTTGAAGGACTACTTTGATGGAAAGGAGCCAAACAAGGGTGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCTAAATGTGAAGGCAGAAGACAAGGGCACTGGTAAATCAGAAAAGATCACCATTACAAACGAAAAGGGACGTCTTAGCCAGGAAGAAATTGAGAGAATGGTTCGCGAAGCAGAGGAGTTTGCAGAGGAAGACAAGAAGGTGAAGGAGAGGATCGATGCTCGCAACAGTCTTGAAACCTATGTATACAACATGAAGAACCAGATCAGTGACAAGGACAAGCTCGCTGACAAGTTGGAGTCTGATGAAAAGGAGAAAATTGAGACTGCTGTGAAAGAAGCACTGGAATGGCTGGATGACAACCAGAGTATGGAGAAAGAAGATTATGAAGAGAAGCTGAAGGAGGTTGAAGCCGTTTGCAACCCAATCATTAGTGCTGTGTATCAGAGATCTGGAGGAGCCCCAGGCGGTGGTGGTGCATCAGGCGAAGAAGACGAGGACGATTCTCACGATGAGCTCTAG

>Glyma05g36620.2   sequence type=CDS   gene model=Glyma05g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTGGCTATCATTTCCTTCGGATGTTTATTTGCAATTTCCATTGCTAAGGAGGAAGCCACAAAATTGGGGACGGTCATCGGGATTGATCTTGGAACGACCTATTCATGTGTTGGTGTTTACAAGAACGGCCATGTTGAAATCATAGCCAATGATCAAGGTAACCGTATCACCCCATCGTGGGTTGCTTTCACCGACAGTGAGAGACTAATTGGAGAGGCTGCCAAGAATCTGGCAGCTGTCAACCCAGAAAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTCGAAGATAAGGAAGTTCAAAGAGATATGAAGCTTGTTCCTTATAAGATTGTCAACAAGGATGGAAAACCTTACATACAAGTGAAAATTAAGGATGGTGAGACCAAGGTGTTCAGCCCTGAGGAAATCAGTGCCATGATTCTGACTAAGATGAAGGAAACTGCGGAAGCATTCCTTGGAAAGAAAATTAATGATGCCGTGGTCACTGTCCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGTCTCAATGTTGCTAGAATTATCAATGAACCCACTGCTGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGCGAGAAGAACATTCTAGTCTTTGATCTTGGTGGTGGGACCTTTGATGTCAGTATCTTGACAATTGATAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGAAAAAGCATGGAAAGGATATTAGCAAGGACAACAGAGCACTTGGCAAGCTGAGGAGAGAGGCTGAGCGTGCAAAGAGGGCTCTCAGCAGCCAGCACCAGGTCCGCGTGGAAATTGAATCACTTTTTGATGGTGTTGATTTTTCTGAGCCACTCACCCGAGCTCGTTTTGAGGAGTTGAACAATGATTTGTTCCGGAAGACCATGGGGCCAGTGAAGAAGGCTATGGAAGATGCAGGATTACAGAAGAGTCAGATTGATGAGATTGTTCTTGTTGGTGGAAGCACAAGGATTCCAAAGGTACAACAGCTTTTGAAGGACTACTTTGATGGAAAGGAGCCAAACAAGGGTGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCTAAATGTGAAGGCAGAAGACAAGGGCACTGGTAAATCAGAAAAGATCACCATTACAAACGAAAAGGGACGTCTTAGCCAGGAAGAAATTGAGAGAATGGTTCGCGAAGCAGAGGAGTTTGCAGAGGAAGACAAGAAGGCGAAGAAGACGAGGACGATTCTCACGATGAGCTCTAGATTAGTCGGAGTCTGTTAA
Predicted protein sequences of Glyma05g36620
>Glyma05g36620.1   sequence type=predicted peptide   gene model=Glyma05g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSWARRSLIVLAIISFGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNLAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQISDKDKLADKLESDEKEKIETAVKEALEWLDDNQSMEKEDYEEKLKEVEAVCNPIISAVYQRSGGAPGGGGASGEEDEDDSHDEL*

>Glyma05g36620.2   sequence type=predicted peptide   gene model=Glyma05g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSWARRSLIVLAIISFGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNLAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIERMVREAEEFAEEDKKAKKTRTILTMSSRLVGVC*






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