SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24040 | AT | Annotation by Michelle Graham. TAIR10: trehalase 1 | chr4:12488242-12491060 FORWARD LENGTH=626 | SoyBase | E_val: 0 | ISS |
| GO:0005991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trehalose metabolic process | SoyBase | N/A | ISS |
| GO:0005993 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trehalose catabolic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004555 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha,alpha-trehalase activity | SoyBase | N/A | ISS |
| GO:0015927 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: trehalase activity | SoyBase | N/A | ISS |
| KOG0602 | KOG | Neutral trehalase | JGI | ISS | |
| PTHR23403 | Panther | TREHALASE | JGI | ISS | |
| PF01204 | PFAM | Trehalase | JGI | ISS | |
| UniRef100_I1K665 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K665_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9XEY7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Trehalase 1 GMTRE1 n=1 Tax=Glycine max RepID=Q9XEY7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g36580 not represented in the dataset |
Glyma05g36580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g219800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g36580.2 sequence type=transcript gene model=Glyma05g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGTATATTTATCAAAAGATGTTATGTGTTGGATGTAAAGAAATGATATTTGTATTGAAGCAATAATAAACCAATGACAACAGAGTTGGGGTAGAACTAGAAAGCATCCCTAGCAAAAGTCAAGGTTGGCCCCTTGCGTCAATCGCCGGCTTCGAAATCGCTGTCAATTATGGCATCACACTGTGTAATGGCCGTGACGCCCTCAACCCCTCTTCTCTCCTTCCTCGAACGCCTCCAAGAAACAGCCTTCGAAACCTTCGCCCATTCCAACTTCGATCCCAAAACCTACGTGGACATGCCTCTCAAGTCCGCCCTCACGGTTACCGAGGACGCGTTCCAGAAGCTTCCGAGGAACGCCAACGGGTCCGTGCCGGTTGAGGATTTGAAGCGTTTCATAGAAGCCTACTTTGAAGGTGCAGGGGATGATCTGGTGTACCGGGACCCACAGGATTTCGTTCCCGAGCCGGAGGGTTTCTTGCCCAAGGTGAACCAGCCTCAGGTTAGGGCCTGGGCCTTGCAGGTCCATTCGCTTTGGAAAAACTTGAGCCGGAAAATATCCGGTGCGGTGAAGGCACAGCCAGACTTACATACGCTGCTCCCTCTCCCTGGTTCGGTTGTCATTCCCGGGTCGCGTTTTCGCGAGGTTTATTACTGGGATTCCTATTGGGTTATTAGGGGCCTGCTGGCCAGTAAAATGCATGACACAGCTAAGGCTATTGTCACCAATCTCATTTCCTTGATAGATAAATATGGCTTTGTTCTTAATGGGGCTAGAGCTTACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCCATGATTTATGAGATATACAATAGCACGGGTGACTTGGAATTAGTTAAAAGATCTCTACCTGCCTTACTGAAAGAATATGAATTTTGGAATTCAGATATACATAAACTGACCATTTTGGATGCTCAAGGTTGCACTCATACCTTAAATCGTTATTATGCAAAGTGGGACAAACCCAGGCCGGAATCGTCCATAATGGACAAGGCATCTGCTTCCAACTTCTCCAGTGTTTCAGAAAAACAGCAGTTTTACCGTGAACTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACCAGATGGATGAGAAATCCACCTAATTTCACAACATTGGCTACAACATCTGTAATACCTGTTGATTTGAACGCATTTCTACTCGGGATGGAACTTAATATTGCCTTATTTGCAAAAGTTACTGGAGATAATAGCACTGCTGAACGGTTCCTGGAAAATTCTGATCTTAGAAAGAAGGCAATGGACTCTATTTTCTGGAATGCAAACAAGAAACAGTGGCTTGATTACTGGCTCAGCAGTACATGTGAGGAGGTTCATGTTTGGAAAAACGAGCATCAGAATCAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAGCCATTTTACTCAGATACTTCGCTTGTGAGTAGTGTTGTTGAAAGTCTCAAAACATCTGGCCTGCTCCGTGATGCTGGAGTTGCAACTTCTTTGACTGATTCAGGGCAACAGTGGGACTTTCCAAATGGGTGGGCGCCGCTTCAACACATGCTAGTGGAAGGACTGCTAAAATCGGGATTGAAAGAAGCAAGGTTATTGGCTGAGGAAATTGCCATCAGATGGGTCACAACCAATTATATTGTTTATAAGAAAACAGGTGTAATGCATGAAAAGTTTGACGTGGAGCATTGTGGAGAATTTGGAGGTGGGGGCGAATATGTACCCCAGACTGGTTTTGGCTGGTCAAATGGAGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGATGTGCCCAGAGATAGAAAGGTGGAAAAAATTTGGTACGCTGCAAGAATTTATTCATGAAAGCTATTTGCATGAGGGGTTGAAGAAAAGTAGTTAATAAATGCGTCAAAAGCCACTTGTTAAAGCCTATAATAAAAGTTGAGATGATTCGAGTTTATTACTTTATTTGCCATTTGATGTTTTACTTGGAAGTATGTTCAGAAAATTCAACAAAAGTGATGGATGTCATCACATATCAATGCTTTGGCACAAATTGATGCATAATTGGACCATTTGATGTGAGTTGCTTAATATACTGGCGTCTGACGGGATTAAACACGATCCAAATGTGACACGTATATTGGGCGGCGCTAACACCGTGATACAAGACTGTATTGGGCTTATATTGTTTGTTACACTCACAACTCCCCTCTCTTCACACCTCCCTCCCCCCTCCCGTCACCTTTTTTTTCTGTGTTGCCAATATGACGGAAATAATGTATTTTGACAAAATCTTATTAAACTAAATATTTTGTCGATGAACATAATGAAAATTGGTTTCTGCTGTATATCTTGACAGTTTTGGTCAAT
>Glyma05g36580.1 sequence type=CDS gene model=Glyma05g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGAGTACGCTCAAAATTATAAAGTGCTCATCCTCACATGGCTCTCACTAACACTAGTCACTGTAACAGCATCACACTGTGTAATGGCCGTGACGCCCTCAACCCCTCTTCTCTCCTTCCTCGAACGCCTCCAAGAAACAGCCTTCGAAACCTTCGCCCATTCCAACTTCGATCCCAAAACCTACGTGGACATGCCTCTCAAGTCCGCCCTCACGGTTACCGAGGACGCGTTCCAGAAGCTTCCGAGGAACGCCAACGGGTCCGTGCCGGTTGAGGATTTGAAGCGTTTCATAGAAGCCTACTTTGAAGGTGCAGGGGATGATCTGGTGTACCGGGACCCACAGGATTTCGTTCCCGAGCCGGAGGGTTTCTTGCCCAAGGTGAACCAGCCTCAGGTTAGGGCCTGGGCCTTGCAGGTCCATTCGCTTTGGAAAAACTTGAGCCGGAAAATATCCGGTGCGGTGAAGGCACAGCCAGACTTACATACGCTGCTCCCTCTCCCTGGTTCGGTTGTCATTCCCGGGTCGCGTTTTCGCGAGGTTTATTACTGGGATTCCTATTGGGTTATTAGGGGCCTGCTGGCCAGTAAAATGCATGACACAGCTAAGGCTATTGTCACCAATCTCATTTCCTTGATAGATAAATATGGCTTTGTTCTTAATGGGGCTAGAGCTTACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCCATGATTTATGAGATATACAATAGCACGGGTGACTTGGAATTAGTTAAAAGATCTCTACCTGCCTTACTGAAAGAATATGAATTTTGGAATTCAGATATACATAAACTGACCATTTTGGATGCTCAAGGTTGCACTCATACCTTAAATCGTTATTATGCAAAGTGGGACAAACCCAGGCCGGAATCGTCCATAATGGACAAGGCATCTGCTTCCAACTTCTCCAGTGTTTCAGAAAAACAGCAGTTTTACCGTGAACTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACCAGATGGATGAGAAATCCACCTAATTTCACAACATTGGCTACAACATCTGTAATACCTGTTGATTTGAACGCATTTCTACTCGGGATGGAACTTAATATTGCCTTATTTGCAAAAGTTACTGGAGATAATAGCACTGCTGAACGGTTCCTGGAAAATTCTGATCTTAGAAAGAAGGCAATGGACTCTATTTTCTGGAATGCAAACAAGAAACAGTGGCTTGATTACTGGCTCAGCAGTACATGTGAGGAGGTTCATGTTTGGAAAAACGAGCATCAGAATCAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAGCCATTTTACTCAGATACTTCGCTTGTGAGTAGTGTTGTTGAAAGTCTCAAAACATCTGGCCTGCTCCGTGATGCTGGAGTTGCAACTTCTTTGACTGATTCAGGGCAACAGTGGGACTTTCCAAATGGGTGGGCGCCGCTTCAACACATGCTAGTGGAAGGACTGCTAAAATCGGGATTGAAAGAAGCAAGGTTATTGGCTGAGGAAATTGCCATCAGATGGGTCACAACCAATTATATTGTTTATAAGAAAACAGGTGTAATGCATGAAAAGTTTGACGTGGAGCATTGTGGAGAATTTGGAGGTGGGGGCGAATATGTACCCCAGACTGGTTTTGGCTGGTCAAATGGAGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGA >Glyma05g36580.2 sequence type=CDS gene model=Glyma05g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCACACTGTGTAATGGCCGTGACGCCCTCAACCCCTCTTCTCTCCTTCCTCGAACGCCTCCAAGAAACAGCCTTCGAAACCTTCGCCCATTCCAACTTCGATCCCAAAACCTACGTGGACATGCCTCTCAAGTCCGCCCTCACGGTTACCGAGGACGCGTTCCAGAAGCTTCCGAGGAACGCCAACGGGTCCGTGCCGGTTGAGGATTTGAAGCGTTTCATAGAAGCCTACTTTGAAGGTGCAGGGGATGATCTGGTGTACCGGGACCCACAGGATTTCGTTCCCGAGCCGGAGGGTTTCTTGCCCAAGGTGAACCAGCCTCAGGTTAGGGCCTGGGCCTTGCAGGTCCATTCGCTTTGGAAAAACTTGAGCCGGAAAATATCCGGTGCGGTGAAGGCACAGCCAGACTTACATACGCTGCTCCCTCTCCCTGGTTCGGTTGTCATTCCCGGGTCGCGTTTTCGCGAGGTTTATTACTGGGATTCCTATTGGGTTATTAGGGGCCTGCTGGCCAGTAAAATGCATGACACAGCTAAGGCTATTGTCACCAATCTCATTTCCTTGATAGATAAATATGGCTTTGTTCTTAATGGGGCTAGAGCTTACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCCATGATTTATGAGATATACAATAGCACGGGTGACTTGGAATTAGTTAAAAGATCTCTACCTGCCTTACTGAAAGAATATGAATTTTGGAATTCAGATATACATAAACTGACCATTTTGGATGCTCAAGGTTGCACTCATACCTTAAATCGTTATTATGCAAAGTGGGACAAACCCAGGCCGGAATCGTCCATAATGGACAAGGCATCTGCTTCCAACTTCTCCAGTGTTTCAGAAAAACAGCAGTTTTACCGTGAACTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACCAGATGGATGAGAAATCCACCTAATTTCACAACATTGGCTACAACATCTGTAATACCTGTTGATTTGAACGCATTTCTACTCGGGATGGAACTTAATATTGCCTTATTTGCAAAAGTTACTGGAGATAATAGCACTGCTGAACGGTTCCTGGAAAATTCTGATCTTAGAAAGAAGGCAATGGACTCTATTTTCTGGAATGCAAACAAGAAACAGTGGCTTGATTACTGGCTCAGCAGTACATGTGAGGAGGTTCATGTTTGGAAAAACGAGCATCAGAATCAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAGCCATTTTACTCAGATACTTCGCTTGTGAGTAGTGTTGTTGAAAGTCTCAAAACATCTGGCCTGCTCCGTGATGCTGGAGTTGCAACTTCTTTGACTGATTCAGGGCAACAGTGGGACTTTCCAAATGGGTGGGCGCCGCTTCAACACATGCTAGTGGAAGGACTGCTAAAATCGGGATTGAAAGAAGCAAGGTTATTGGCTGAGGAAATTGCCATCAGATGGGTCACAACCAATTATATTGTTTATAAGAAAACAGGTGTAATGCATGAAAAGTTTGACGTGGAGCATTGTGGAGAATTTGGAGGTGGGGGCGAATATGTACCCCAGACTGGTTTTGGCTGGTCAAATGGAGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGA
>Glyma05g36580.1 sequence type=predicted peptide gene model=Glyma05g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEYAQNYKVLILTWLSLTLVTVTASHCVMAVTPSTPLLSFLERLQETAFETFAHSNFDPKTYVDMPLKSALTVTEDAFQKLPRNANGSVPVEDLKRFIEAYFEGAGDDLVYRDPQDFVPEPEGFLPKVNQPQVRAWALQVHSLWKNLSRKISGAVKAQPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLLASKMHDTAKAIVTNLISLIDKYGFVLNGARAYYTNRSQPPLLSAMIYEIYNSTGDLELVKRSLPALLKEYEFWNSDIHKLTILDAQGCTHTLNRYYAKWDKPRPESSIMDKASASNFSSVSEKQQFYRELASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFLLGMELNIALFAKVTGDNSTAERFLENSDLRKKAMDSIFWNANKKQWLDYWLSSTCEEVHVWKNEHQNQNVFASNFVPLWMKPFYSDTSLVSSVVESLKTSGLLRDAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGLKEARLLAEEIAIRWVTTNYIVYKKTGVMHEKFDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC* >Glyma05g36580.2 sequence type=predicted peptide gene model=Glyma05g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASHCVMAVTPSTPLLSFLERLQETAFETFAHSNFDPKTYVDMPLKSALTVTEDAFQKLPRNANGSVPVEDLKRFIEAYFEGAGDDLVYRDPQDFVPEPEGFLPKVNQPQVRAWALQVHSLWKNLSRKISGAVKAQPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLLASKMHDTAKAIVTNLISLIDKYGFVLNGARAYYTNRSQPPLLSAMIYEIYNSTGDLELVKRSLPALLKEYEFWNSDIHKLTILDAQGCTHTLNRYYAKWDKPRPESSIMDKASASNFSSVSEKQQFYRELASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFLLGMELNIALFAKVTGDNSTAERFLENSDLRKKAMDSIFWNANKKQWLDYWLSSTCEEVHVWKNEHQNQNVFASNFVPLWMKPFYSDTSLVSSVVESLKTSGLLRDAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGLKEARLLAEEIAIRWVTTNYIVYKKTGVMHEKFDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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