SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26590 | AT | Annotation by Michelle Graham. TAIR10: regulatory particle non-ATPase 13 | chr2:11311182-11314717 REVERSE LENGTH=300 | SoyBase | E_val: 4.00E-144 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3037 | KOG | Cell membrane glycoprotein | JGI | ISS | |
| PTHR12225 | Panther | ADHESION REGULATING MOLECULE 1 (110 KDA CELL MEMBRANE GLYCOPROTEIN) | JGI | ISS | |
| PF04683 | PFAM | Proteasome complex subunit Rpn13 ubiquitin receptor | JGI | ISS | |
| UniRef100_G7LIU7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Proteasomal ubiquitin receptor ADRM1 n=1 Tax=Medicago truncatula RepID=G7LIU7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K657 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K657_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma05g36490 not represented in the dataset |
Glyma05g36490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g03080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g220700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g36490.2 sequence type=CDS gene model=Glyma05g36490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCGTCTTCGGCAGATGTTTTTCCAGCAATTCAGGAAGTTATGCTGGAGTTCCGTGCTGGCAAAATGTTTCTTGAGGAAAAAAGGGTTGTTCCCGATACACGGAAAGGACTTGTTCGAATTGCTAGGGGTGAGGAGGGATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGATGATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAGGTTAATCAAACATCTGGAAGGGTTTACATACTGAAGTTTAATAGCGATGACAGGAAGTTCTTCTTCTGGATGCAGGAATCAAATGCTGATGGTGATTCACAACTGTGTAGCTCAGTGAATGATTACATTAATAGACCATTAGAGTTGCTTGGTGAAGAGGAGCCTGATGGATCCCTTCCACTTCAAATTTCTGAAGATATGACAGAGGATGACATCTCGTCCAGAGCTGCAAACTTAGGTATCCCAAACTTGGGTGTGGAAGCAACTAGTGATGTAACATCTTCTGGTCCGGTTAAATTGGAAGATCTCCAAAGAATATTGAGTAACATTGGACCTGCAGATAGTATTGTTGATCCTGATGGAGGCTTGGGACTCGGAGATATATTGAAGCCTGATCTAATAATGCCATTGATGGACATGTTACCTTTGGAGCAGCGTTTAGCTCCCTACTTACCTGAGGGTAAATGGTCTCCAGAAGAGATATTGGAGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCGTTTACTTATGTACTTCGAACGGGACAGATAGACTTGTCTCAATTTGGAATTGATCCAAGTAAATACAAGTTCACAGTTTTGTCTTTTCTTGAGGCTCTTGAGGATTCTGTTTCCAAGTCGGTTGAGTCTGAAGAGGCTAGGCAAGATGATCAGGATTTGAGATCTCAATCTTGTAACCGTCATGACCCAATGGATGAATCTCAGTAG
>Glyma05g36490.2 sequence type=predicted peptide gene model=Glyma05g36490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSSADVFPAIQEVMLEFRAGKMFLEEKRVVPDTRKGLVRIARGEEGLVHFQWLDRTQNVVEDDQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADGDSQLCSSVNDYINRPLELLGEEEPDGSLPLQISEDMTEDDISSRAANLGIPNLGVEATSDVTSSGPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDMLPLEQRLAPYLPEGKWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVESEEARQDDQDLRSQSCNRHDPMDESQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
