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Report for Sequence Feature Glyma05g36260

Feature Type:gene_model
Chromosome:Gm05
Start:40106365
stop:40113788
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G29490AT Annotation by Michelle Graham. TAIR10: Metallopeptidase M24 family protein | chr4:14487943-14491321 FORWARD LENGTH=486 SoyBaseE_val: 0ISS
GO:0009987GO-bp Annotation by Michelle Graham. GO Biological Process: cellular process SoyBaseN/AISS
GO:0004177GO-mf Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity SoyBaseN/AISS
GO:0030145GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion binding SoyBaseN/AISS
KOG2737 KOG Putative metallopeptidase JGI ISS
PTHR10804Panther PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) JGI ISS
PTHR10804:SF17Panther PROLINE AMINOPEPTIDASE P JGI ISS
PF00557PFAM Metallopeptidase family M24 JGI ISS
PF05195PFAM Aminopeptidase P, N-terminal domain JGI ISS
UniRef100_B9RKB6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Xaa-pro dipeptidase, putative n=1 Tax=Ricinus communis RepID=B9RKB6_RICCO SoyBaseE_val: 0ISS
UniRef100_I1K635UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K635_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g36260 not represented in the dataset

Glyma05g36260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g03381 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g222900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g36260.1   sequence type=CDS   gene model=Glyma05g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGATGAGCATCCTAAGTTGTGGATGGAGCTACATGTCAAAAACAGGGAGAAGCTTCTCACATCCCTTCGTCAACACCTCTCCGACTCTTCTCGTTCTCTCCATGGCTTCGTCCTCCTTCAAGGTGGCGAGGAGCAAACGCGTTACGACACCGATCACTTGGAGCTCTTCAGGCAAGAGAGTTACTTCGCTTACTTGTTTGGAGTCATAGAGCCTGGATTCTATGCAGCTATTGACGTTGCAACTGGGAATTCTATCCTATTTGCTCCTAGGTTACCTTCTGAGTATGCTGTTTGGTTGGGGGAGATTAAGCCACTCTCCTACTTTAAGGAACACTACATGGTTACCACGTGTTGCTTCTCAGATGAAATTGAAAGTGTATTGCAACAACATTACCAGTGTTCCGGGAAACCTTTGCTGTTTCTCTTGCATGGCCTTAATACAGATAGCGATAATTACTCTAAACCAGCACAGTTTCAGGGCATTGATAAGTTTGACAAGGATTTGACTACTTTGCATCCTATATTGACTGAATGCCGTGTCATCAAGTCAGAGCTGGAAATTGCTCTTATTCAGTATGCCAATGATATAAGCTCTGAAGCTCATGTTGAGGTTATGAGAAAAACTAAAGTGGGCATGAAGGAGTATCAGCTTGAAAGCATTTTTCTTCACCACACCTACATGTATGGTGGATGCCGGCATTGCTCCTATACATGTATTTGTGCTACTGGTGATAATAGTGCTGTTCTTCATTATGGCCATGCAGCAGCTCCTAATGACAAGATTTTGGAAGATGGAGACATGGCGCTGTTTGATATGGGAGCTGAGTACCATTTCTATGGATCTGACATAACTTGTTCTTTCCCTGTGAATGGAAAGTTTACAAGTGATCAATCTCTTATATATAGTGCTGTGCTAGATGCTCATAATGCCGTTATATCTGCAATGAAACCTGGAATAAACTGGGTTGATATGCACATATTAGCAGAAAAAGTGATTCTGGAGTCACTGAAGAGGGGACATGTTATATTGGGTGATGTTGATGACATGATGGCTTCACGCTTGGGTGCTGCTTTTATGCCACATGGTCTGGGGCATTTCCTTGGTATTGACACACATGACCCTGGAGGCTACTTAAAGGGCCTGGAAAGAAGAAAGGAACCTGGATTAAAATCTTTGCGGACAATCAGAGATCTCCGGGAAGGAATGGTTATCACTGTGGAGCCTGGATGCTACTTTATTGATGCTTTGCTACTTCCTGCCATGAATAGTCCAGAAACTTCCAAGTTCTTAAATCAGGAAGCAATTAATAGGTTTAAAGGTTTTGGTGGAGTCCGAATTGAGAGTGATGTGCTTGTTACTGCCACTGGTTGCTACAATATGACCAAGTGTCCAAGGGAAATGCGGGAGATTGAGGCAGTGATGGCAGGGGCACCATGGCCAGCTCAGAAGATCTAA

>Glyma05g36260.1   sequence type=predicted peptide   gene model=Glyma05g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDEHPKLWMELHVKNREKLLTSLRQHLSDSSRSLHGFVLLQGGEEQTRYDTDHLELFRQESYFAYLFGVIEPGFYAAIDVATGNSILFAPRLPSEYAVWLGEIKPLSYFKEHYMVTTCCFSDEIESVLQQHYQCSGKPLLFLLHGLNTDSDNYSKPAQFQGIDKFDKDLTTLHPILTECRVIKSELEIALIQYANDISSEAHVEVMRKTKVGMKEYQLESIFLHHTYMYGGCRHCSYTCICATGDNSAVLHYGHAAAPNDKILEDGDMALFDMGAEYHFYGSDITCSFPVNGKFTSDQSLIYSAVLDAHNAVISAMKPGINWVDMHILAEKVILESLKRGHVILGDVDDMMASRLGAAFMPHGLGHFLGIDTHDPGGYLKGLERRKEPGLKSLRTIRDLREGMVITVEPGCYFIDALLLPAMNSPETSKFLNQEAINRFKGFGGVRIESDVLVTATGCYNMTKCPREMREIEAVMAGAPWPAQKI*







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